Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0607 ATGTATGCTTCAACCTCCTTTGCCTCACCACTGATCCATGACCTTCTTTCGGACTTCCATTCAAGAAGGTTACTCCTCCTTCACACCCCACTTAACCAATCACAAAACAGTCACAACTCAACAGAATCATCATATCTTGGGAATGGTAACTTCGATGCAAATGTTGTGATGGTTCTCTCTGTCCTGTTATGTGCTCTCATCTGCTCACTGGGACTGAACTCCATCATAAGGTGTGCATTAAGGTGTTCCAATTTGGTAATAATCAGTACTAATAGCTCATCAACTAGCACCCCTCCAACCAGAGTTGTCAACACAGGGGTGAAGAAGAAAGCCCTCAAGACATTTCCAACAGTAAACTACTCTGCTGAACTGAACCTTCCAAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGATTTCACCAATGGAGATAGGGTCAGGATTCTGCCAAAGTGCAACCATGGCTTCCATATCAGATGCATTGACAAATGGTTAAGTTCACACTCATCTTGCCCCAAGTGCAGACACTGCCTCATTGAGACTTGTCAAAAGATTGTTGGTTGCAGCCAAGCTAGCTCATCACAACCTCAACCACAAGTGCCAGAAACCATTGTAACCATAACACCACTAGACCCAGAAAGTTTGGTTCGTAGTTATAGGGGAAGTTAA 669 0.4365 MYASTSFASPLIHDLLSDFHSRRLLLLHTPLNQSQNSHNSTESSYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVIISTNSSSTSTPPTRVVNTGVKKKALKTFPTVNYSAELNLPSLDSECVICLSDFTNGDRVRILPKCNHGFHIRCIDKWLSSHSSCPKCRHCLIETCQKIVGCSQASSSQPQPQVPETIVTITPLDPESLVRSYRGS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0607 222 Pfam Ring finger domain 132 175 IPR001841 -
Aev08g0607 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 179 IPR013083 -
Aev08g0607 222 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Aev08g0607 222 PANTHER RING-H2 FINGER PROTEIN ATL78 1 221 - -
Aev08g0607 222 CDD RING-H2_PA-TM-RING 132 175 - -
Aev08g0607 222 SMART ring_2 133 174 IPR001841 -
Aev08g0607 222 PANTHER RING-H2 FINGER PROTEIN ATL78 1 221 IPR044602 GO:0016567|GO:0016740
Aev08g0607 222 SUPERFAMILY RING/U-box 111 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0607 Aev-Chr8 3479119 3479787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0607 25 179 C3H Transcription Factor Family AT3G10910 44.025 2.55e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0607 K19040 - gmx:100787934 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2888 03 28251879 28252577 Aev08g0607 08 3479119 3479787 PCT