Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0601 ATGCTGGTTTCTAATGATGGAGATAGTGATGTGTTCTTTGACTCGGTGGATTCTCTATCACCACAGGAATCTGGTTTGACCAGACAAGATTTTGGTTATGAGATTTGGGTGAATGAGCCTCTTAGTGTGAAGGAAAGAAGGGATAGATTCTTAAAGGGGATGGGTTTTGCTGATGCTCCTACCAAGGCTTGTTCAATAGAGAAGTCGAATAGCTTTGGTGCATCATCAATTGACTTGGGAATGGAGAGGCTCAGGGACTGCAGAGGAGCAGTCTCGAATCCTTGCATTTCTTATGCGGATCGAGTTCCTGAGAGGTTTCTTCCTTCAGGATGGGAAACAACTTCTGAAGCAGAAGTCTTGCTTGATGAACTCAAAATGCGTCCGGACGATAAAATAGATACGAGTTTTCATGGGGAGGTGTATGAACACTCTTTGGATCGAGAGCAATTATGTAGAGAAGCTGAGGCCAGAGAAGAGTCTCGGGACTTAGATAGTTGTAACAGGAAGAAGAGAAACTGGTGGAAGTTCTTGATGAACAGGGGAAAAGAAGGTGGAGGAGAATCTAGATCAAAATTGAATAAGGGAACAACAAGAACTCGAAGAATCAATGTAAAGCAGAATAAGAAGAGGTGGATGGAATTCGGTGCAATGTACATTGGACAGGAGATTAGAGCTCACAAAGGCCTAATCTGGACAATGAAATTTAGTCCCAACGGCCAGTACCTAGCTAGTGGAGGTGAAGATGGTGTTGTACGCATTTGGAGTGTTAAATCACTCGATACGTCCAGTATTTTCTTCACTGCAGCAGACAGCACTGCTGGCAAAGCAAAGCATGACATCCCTGGTTCTCAGAAGAAACACTCAAGCCAATCCTTCATTGTGCTTCCAAATAAGATTTTCCAAATTGAGGAATCACCATTGCAAGAATTTTATGGTCATTCAAGTGATGTCTTGGATTTAGCTTGGTCTAGTTCAGATATTCTCCTTTCATCTTCCATGGATAAAACTGTTCGCATGTGGCAAATAGGTTGTAATCAATGTCAAAGTGTTTTCCATCACAAAGACTATGTGACCTGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGGTCCATAGATGGTAAAGTTCGAATATGGGGCGTACGTGAAGAACGAGTTGTTGACTGGGCAGACATAATAGATGTCATAAGTGCTATAAGTTACCAGCCAGATGGAAAAGGCTTTGTGGTTGGTTCCCTTACAGGCACATGTCGCTTTTATGTTGCCTCAGGCAAGCATTTCCAGCTTGAGGCGCAGATTCATGTCAACGGAAAGAAGAGAACATCTGGCAACAAGATCACCGGCATTCAGTTTTCCGATAAGAACCCCCGGAGAGTTATGGTCACATCTGAAGATTCCAAAGTTCGAATCTTGGAAGGCATTGAACTTGTTCAGACATATAAAGGGCTTTCAAAGTCAGGAAGCCAGATGTCTGGTTCATTTACATCAAGTGGAAGACATATAGTTTCAGTTGGAGACGATTCTCGCGTGTATATTTGGAATTATAACGACTTTGGAAGTGCTTCTTCCAAACAGACAAAATCCAATCATTCCTGCGAGTACTTTTCCTCCAAGGGGGTCACCGTTGCGATTCCTTGGTCAGGCATGGGTGCAGAATCGAGGAGCCTCAGCAACAGTTTTGCGCACTATTCTTCAGAAATTCAACACCAATCAGGGTCGGAACGTTTCTCATTTGGTAGTTGGTTCTCGGTTGATGGTGGTACGTGCCGAGGTTCTATGACATGGCCTGAGGAGAAGCTCCCGATCTGGGATTTACCTCTTGTGGCAGATGAATTTGGTCAGAAGCATCTATGCCTAAAAGAATCTTGCAATCACAACTGTGTATCAGAAACATGGGGGCTATCAATTGTTGCTGGTGGTTGTGATGGAACAATCAAGACATTCCACAACTTTGGATTGCCCTACAGGGTTTAG 1983 0.4337 MLVSNDGDSDVFFDSVDSLSPQESGLTRQDFGYEIWVNEPLSVKERRDRFLKGMGFADAPTKACSIEKSNSFGASSIDLGMERLRDCRGAVSNPCISYADRVPERFLPSGWETTSEAEVLLDELKMRPDDKIDTSFHGEVYEHSLDREQLCREAEAREESRDLDSCNRKKRNWWKFLMNRGKEGGGESRSKLNKGTTRTRRINVKQNKKRWMEFGAMYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWSVKSLDTSSIFFTAADSTAGKAKHDIPGSQKKHSSQSFIVLPNKIFQIEESPLQEFYGHSSDVLDLAWSSSDILLSSSMDKTVRMWQIGCNQCQSVFHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGVREERVVDWADIIDVISAISYQPDGKGFVVGSLTGTCRFYVASGKHFQLEAQIHVNGKKRTSGNKITGIQFSDKNPRRVMVTSEDSKVRILEGIELVQTYKGLSKSGSQMSGSFTSSGRHIVSVGDDSRVYIWNYNDFGSASSKQTKSNHSCEYFSSKGVTVAIPWSGMGAESRSLSNSFAHYSSEIQHQSGSERFSFGSWFSVDGGTCRGSMTWPEEKLPIWDLPLVADEFGQKHLCLKESCNHNCVSETWGLSIVAGGCDGTIKTFHNFGLPYRV* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0601 660 Pfam WD domain, G-beta repeat 305 340 IPR001680 GO:0005515
Aev08g0601 660 Pfam WD domain, G-beta repeat 346 382 IPR001680 GO:0005515
Aev08g0601 660 Pfam WD domain, G-beta repeat 222 255 IPR001680 GO:0005515
Aev08g0601 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Aev08g0601 660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 258 - -
Aev08g0601 660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 350 385 - -
Aev08g0601 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 342 IPR001680 GO:0005515
Aev08g0601 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 392 IPR001680 GO:0005515
Aev08g0601 660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 342 - -
Aev08g0601 660 SMART WD40_4 344 383 IPR001680 GO:0005515
Aev08g0601 660 SMART WD40_4 476 517 IPR001680 GO:0005515
Aev08g0601 660 SMART WD40_4 429 475 IPR001680 GO:0005515
Aev08g0601 660 SMART WD40_4 385 424 IPR001680 GO:0005515
Aev08g0601 660 SMART WD40_4 216 255 IPR001680 GO:0005515
Aev08g0601 660 SMART WD40_4 303 341 IPR001680 GO:0005515
Aev08g0601 660 Gene3D - 214 548 IPR015943 GO:0005515
Aev08g0601 660 SUPERFAMILY WD40 repeat-like 219 650 IPR036322 GO:0005515
Aev08g0601 660 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 659 - -
Aev08g0601 660 PANTHER WD REPEAT DOMAIN 44 1 659 IPR040324 -
Aev08g0601 660 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Aev08g0601 660 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Aev08g0601 660 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0601 Aev-Chr8 3440968 3443702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0601 212 516 Miscellaneous Gene Families AT5G08390 19.620 1.46e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0601 K20241 - gmx:100780979 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0601 08 3440968 3443702 Aev08g0601 08 3440968 3443702 ECH
Aev03g2895 03 28319637 28322750 Aev08g0601 08 3440968 3443702 PCT