Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0596 ATGGCATTGCTGAGGGAAGCGCGTGGCATTACAGGCTTGAAGGATGTTCGGGGAGGGGGCGGAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAAGGTGAGGATGATGCAGAGAGTGAGGGAGAGGGAGAGGATGGTGGCCATTGTGAGGATGAGGAAGGTGGATCTGACCACACTGCAAACATTACAGCTTTGGCTAGTGAAATGAGTGGAAGTGGCAGAAAGCGCTCTTCAAAGTGGGATTTGGGAGATGGTTCTGAATTTGCACCTGATAGTAAGCAATTACGGTCCAGATGGTCCTCTGAAGATGTTGCTGGTAGCAATAATTCAAAGCGACCCCATATTGAAGGAAATGACAAGTTGAAACCTGGCTTGGGTAGGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAAGATGATATTATGGATAAAGACTACAGAGGTATGGATGCAGAAATAGAGTGGGAAGCAGATGCAAGCTACAGCAAGAAAATATCTCCTGGGTTTGAGGAATGGCAACATCAGAGACATAATCAATCTCCAAAAAATGTTCGGATAAGATCAGGCAGGAGTAGTAGGAGCCGAAGCCCTCCCCATGGGTTTAGATTGGATTCAGGAGTCAATGACAGAAATAGAATGAGGGGTGGAGGATCAACACAAATTTGTAGAGATTTTTCTGCTGGTAAGTGCAGAAGAGGCAGCAATTGCCATTTTCTTCACCATGATGACCACAATTATGAGGATAGTTGGGAAAGTAAAAACAGGGAAGATGGAGCTCCCAGATATTCAGATCCACATGAGCGTAGGGACCATTCACATAAGAGTGGTAGGTCTAATGAAGCTTGTATTCATTTTGCAAAAGGCAGGTGTAGAATGGGAGCATCATGCAAATATGTGCATCATGACATTTCTGATGGGTATGGTAAAAGTTCAGTTGATGAATTACAGAGAGAAAGGGATAATGATGGGAGGCGCAAAGATAATTCTTTTGAGCAGGGCAGTGGACATGTGCCAAACCGCGGTGGTGATACTCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATATGCAAACATGTAGGAGCCCTAATAGAAGGTTAAGGGATGAAAAGTGGGGAAGCAGTCCAGGTGGAGATCATCAGACATTGGATAGACCAAAATTGAGTGATTCATTTAGTCCTAATGGAAGGTTAAGAACTGATAGATGGGGTATAGATGGCAGTATGTCTGATGCAGATAAAGCGTGGGACAGTCCAAAGCAGAATGATATAGTTGTTGTCTCTGATTCAGCAAAGCTGGTTGAAGATAAAGTTGGAGATATGGGTGCAACTGATCCTGGTCTTACTGTATGGCCTATGAGAGATGCACAGGATCATAGTTTAGATAAGAGCAGGGTGCATGGTGAACCCCCATTTTCAAGTGATAAGAAGGAAGCTGACCATTGGCTAGCAGAAAATGCTGGTGCCAACATGCACACTCCCCAGACAGTAGGTATAGACATTTGGCCTGGTGATTCAAAAATGTCTCCTGATTGGAACTATAGGGTAGGATCTTCCAGCCATATAGAAGAAGAGCATGGGAAGATTATTGCCGGGTTAACCCAGGGCAGTACGCAATTAGCCACAGCCGAACATGACAGAGTACAAGTTACTCCAGGACAAGACTTGAATCAGAATTTGCAAAATGTTAATGCTTGGGATTCTTCAAGACTCCATGCAGTTGAACAAGTTCAAGTGGCAGTTCCTATTCTTCCATCAAAAGCAGGAGCCATTGAAGGTTTGCAAAACCAAGAAGTCTCTTCTGAGAAAAAGTACTCTGTTGAACCGAATATCATGGATGCAGGCTCATCACAGATTAGTTCCAGAAATCCTCCAATGCAGGACATGGTAAGCAAAGAACAGCTTGCTCAATTGTCCAATCTCTCAGTCTCTTTGGCTCATATCCTTGGATCAGGTCAGCAATTGCCACAACTCTATGCTGCCTTAAATCCTCACAATGTTAAGGACCCTCCTTCCCAAGCCAAAACTGAAGTGCCTACTACAATGGTTTCCAATACATTGGTCAAGCCAGATCCTGATGTTGGATTCCCAAAGCCGTATGATCCAATGTGTGATAGTATTGAGCTAAAGGAAGCTGTTGCTAGTGGGAAACAAAATTGTGGTGATTCTTCTAAGGATAACAATGAAGTGGTAGCTGAGGAAAGACCAAATTCTCTAGATGGTCTTAAAAATACAAAAGAGAATGGTCCTTTGGAAAACATGGACCGGAATGGTGGACCAGATGAGGCCAAGAAACCCAAGGATGTAAAGGGGATTCGTGCATTTAAATTTTCATTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACTAAAGAAGATTATAAAACAATTGTGAAAAAAGTTGTTGATAAAGTAACTGGTACCATGCAGGAGGGCCATATTCCTCAGACACAAGAGAAAATTGACCATTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGCCCCAGTGA 2589 0.4303 MALLREARGITGLKDVRGGGGGEGEGEGEGEGEDDAESEGEGEDGGHCEDEEGGSDHTANITALASEMSGSGRKRSSKWDLGDGSEFAPDSKQLRSRWSSEDVAGSNNSKRPHIEGNDKLKPGLGREPFSGGRGSNKDDIMDKDYRGMDAEIEWEADASYSKKISPGFEEWQHQRHNQSPKNVRIRSGRSSRSRSPPHGFRLDSGVNDRNRMRGGGSTQICRDFSAGKCRRGSNCHFLHHDDHNYEDSWESKNREDGAPRYSDPHERRDHSHKSGRSNEACIHFAKGRCRMGASCKYVHHDISDGYGKSSVDELQRERDNDGRRKDNSFEQGSGHVPNRGGDTLCKFFANGNCRNGKYCRFSHDMQTCRSPNRRLRDEKWGSSPGGDHQTLDRPKLSDSFSPNGRLRTDRWGIDGSMSDADKAWDSPKQNDIVVVSDSAKLVEDKVGDMGATDPGLTVWPMRDAQDHSLDKSRVHGEPPFSSDKKEADHWLAENAGANMHTPQTVGIDIWPGDSKMSPDWNYRVGSSSHIEEEHGKIIAGLTQGSTQLATAEHDRVQVTPGQDLNQNLQNVNAWDSSRLHAVEQVQVAVPILPSKAGAIEGLQNQEVSSEKKYSVEPNIMDAGSSQISSRNPPMQDMVSKEQLAQLSNLSVSLAHILGSGQQLPQLYAALNPHNVKDPPSQAKTEVPTTMVSNTLVKPDPDVGFPKPYDPMCDSIELKEAVASGKQNCGDSSKDNNEVVAEERPNSLDGLKNTKENGPLENMDRNGGPDEAKKPKDVKGIRAFKFSLVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGTMQEGHIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKPQ* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0596 862 MobiDBLite consensus disorder prediction 370 413 - -
Aev08g0596 862 SMART c3hfinal6 276 301 IPR000571 GO:0046872
Aev08g0596 862 SMART c3hfinal6 339 365 IPR000571 GO:0046872
Aev08g0596 862 SMART c3hfinal6 215 241 IPR000571 GO:0046872
Aev08g0596 862 MobiDBLite consensus disorder prediction 306 330 - -
Aev08g0596 862 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 68 725 - -
Aev08g0596 862 MobiDBLite consensus disorder prediction 92 111 - -
Aev08g0596 862 MobiDBLite consensus disorder prediction 1 144 - -
Aev08g0596 862 MobiDBLite consensus disorder prediction 26 49 - -
Aev08g0596 862 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 730 859 - -
Aev08g0596 862 SUPERFAMILY CCCH zinc finger 342 364 IPR036855 GO:0046872
Aev08g0596 862 Pfam CCCH-type zinc finger 344 364 IPR041367 -
Aev08g0596 862 Pfam RNA-binding, Nab2-type zinc finger 280 299 - -
Aev08g0596 862 Gene3D - 212 316 - -
Aev08g0596 862 MobiDBLite consensus disorder prediction 306 336 - -
Aev08g0596 862 ProSiteProfiles Zinc finger C3H1-type profile. 215 242 IPR000571 GO:0046872
Aev08g0596 862 ProSiteProfiles Zinc finger C3H1-type profile. 339 366 IPR000571 GO:0046872
Aev08g0596 862 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 240 IPR000571 GO:0046872
Aev08g0596 862 Gene3D - 336 388 - -
Aev08g0596 862 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 730 859 - -
Aev08g0596 862 MobiDBLite consensus disorder prediction 165 220 - -
Aev08g0596 862 MobiDBLite consensus disorder prediction 246 276 - -
Aev08g0596 862 MobiDBLite consensus disorder prediction 723 774 - -
Aev08g0596 862 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Aev08g0596 862 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 68 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0596 Aev-Chr8 3411880 3419515 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev08g0596 zf-CCCH 1.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0596 - K22909 gmx:100783856 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0596 08 3411880 3419515 Aev08g0596 08 3411880 3419515 ECH
Aev03g2901 03 28349712 28353872 Aev08g0596 08 3411880 3419515 ECH