Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0565 ATGGCGTACCACAATCACCACCTCTCCGAAGACCTTCCGCTGCATCACCATTTCACAACAGACCAGCAGCAACAACAACAACAGCCTGATAACCACCCTCTCTCCGACAACTCCATGTTACCCGACCACCTCGCCTCCGACCCTAACTCCAAACCAAACTCCGATCCTCACCCCAATTGGCTCAACAACGCCCTCCTTCGAACCCACTACACCAACAACAACGATACCAACAACAACGCCTCCAATTTCCTTAACCTCCACACCGCCGGTTCCGACTCCACCGCCGCCGCATCCCAATCCTCCGGCCAATGGCTCTCCCGCCCCGTCCTCCACCGCAACCACAGCGAGGTCATCGACGACGTCGCCGCCGCCGGAGACTCTGTAATCGCCGCCACCATGTCACATGAATCCGCAGACTTGAAGGCTCCCGCCGGGGACAGCAAAGGCGATGCTGCGGCGGCGATGGTTGCGGAGAGCGGCGGTGGGGATGGGTTGGGGAACTGGCAGAATGCGAGGTACAAGGCGGAGATTCTATCGCACCCGCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGAGGATCGCCACGCCGGTTGACCAGCTTCCAAGGATCGACGCTCAGTTGGCACAGTCCCAGAATGTCGTCGCCAAGTACTCTGCCTTCGGACATGCCCCTCTCGGAGATGATAAGGAACTCGATCAATTCCTGTCACACTATGTTCTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTTATGGCTTGCTGGGAGATCGAGCAATCCTTACAAAGTCTCACAGGAGTTTCACCTGGGGAAGGCACAGGAGCAACAATGTCGGATGATGAAGACGACCAAGTGGACAGCGATGCGAATCTGTTTGATGCTAGTTTGGATGGGGCTGATACCATGGGATTTGGCCCTCTTATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAACTGAAGCATGAATTGAAACAGGGTTATAAGGACAAAATTGTGGACATAAGAGAGGAAATTCTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAGGCCTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCGAGGTTGGTGCAGGAAACAGGTTTGCAATTGAAGCAGATCAATAATTGGTTCATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCATCATCTTCCACTGTCTTGAAGAGCAAGCGCAAAAGGGGAAATACCTAA 1311 0.5332 MAYHNHHLSEDLPLHHHFTTDQQQQQQQPDNHPLSDNSMLPDHLASDPNSKPNSDPHPNWLNNALLRTHYTNNNDTNNNASNFLNLHTAGSDSTAAASQSSGQWLSRPVLHRNHSEVIDDVAAAGDSVIAATMSHESADLKAPAGDSKGDAAAAMVAESGGGDGLGNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHAPLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDASLDGADTMGFGPLIPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKRGNT* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0565 436 SMART KNOX2_2 224 279 IPR005541 GO:0003677|GO:0005634
Aev08g0565 436 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 50 434 - -
Aev08g0565 436 MobiDBLite consensus disorder prediction 18 35 - -
Aev08g0565 436 MobiDBLite consensus disorder prediction 18 62 - -
Aev08g0565 436 Pfam KNOX2 domain 228 278 IPR005541 GO:0003677|GO:0005634
Aev08g0565 436 MobiDBLite consensus disorder prediction 416 436 - -
Aev08g0565 436 Pfam KNOX1 domain 173 214 IPR005540 GO:0003677|GO:0005634
Aev08g0565 436 Pfam Homeobox KN domain 376 415 IPR008422 GO:0003677|GO:0006355
Aev08g0565 436 MobiDBLite consensus disorder prediction 42 62 - -
Aev08g0565 436 SMART ELK_2 336 357 IPR005539 GO:0003677
Aev08g0565 436 Pfam ELK domain 336 357 IPR005539 GO:0003677
Aev08g0565 436 ProSiteProfiles 'Homeobox' domain profile. 356 419 IPR001356 GO:0003677
Aev08g0565 436 SMART KNOX1_2 171 215 IPR005540 GO:0003677|GO:0005634
Aev08g0565 436 SMART HOX_1 358 423 IPR001356 GO:0003677
Aev08g0565 436 ProSiteProfiles ELK domain profile. 336 356 IPR005539 GO:0003677
Aev08g0565 436 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 434 - -
Aev08g0565 436 CDD homeodomain 359 420 IPR001356 GO:0003677
Aev08g0565 436 Gene3D - 355 429 - -
Aev08g0565 436 SUPERFAMILY Homeodomain-like 358 422 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0565 Aev-Chr8 3264130 3267628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0565 1 433 Homeobox Transcription Factor Family AT5G25220 67.033 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aev08g0565 KNOX2 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0565 - - gmx:100790048 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0565 08 3264130 3267628 Aev08g0565 08 3264130 3267628 ECH