Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0556 ATGGTGGCGGCTTCTAGCTCCCAGGGGAGAAATTTATCGTCATCAAGTTTGAGTGAAATAGGTACAGAGAAAGCATTGGAAAGGTTAGAAGAAGAAGCGAAAACAGGGGAAGTGGTGGTTGTAGTAAGAGGAGAGGCTGCCATGGATCGAGAAGCGATGATACCATGTTTTGGGTTCCCGCGAAATTCCGAATCTCCTCGAACCAGATCGCCGGAAAATCTCGCATTACACGGATTTCAATCATTTTGGCGGAACATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCGATTTATAATATAGATGATTCAGACGATGATGCTGATTTTTTGCCTAGAAAACCTGGGATAGCTCAGGAGAAGTTGGAGAGGATAGATAGAAGTGATGCAAAAGAGAATTTGTGTCAAGCCTGTGGAGAAAGCGGAGATCTTCTGAATTGTGAAACATGCACTTATGCTTACCATGCTAGGTGTTTAGTTCCACCAATTAAAGGTCCCGTCCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAAATTTTAGATTGTGAGATGCGCCCAACTGTAGCTGCTGACAGTGATACCAACCAATTAGGGTCAAAGCAAATATTTGTCAAACAGTACCTTGTTAAGTGGAAGGGGCTGTCATATCTGCACTGCACATGGGTGCCAGAGAAAGAGTTTCTGAAAGCTTACAAGACTTTTCCTCGTCTGAAGACCAAAGTGAACAACTTCCATCGTCAGATGGCATCTGTCAATACTACGGACGAAGACTTTGTTGCTATTCGACCTGAGTGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGACGAAGATGAGAAGGAATATTTCGTGAAGTGGAAAGAGCTTCCGTATGATGAATGTTATTGGGAGTTTGAGGCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTTAGGTCTAAATCCAACAAACTCGCTTTCATTAAGCAAAAAAGCAGTGTAAAGGATGATGGTGAATTGAGGAAACAGCAGAAAGAATTTCAACAATGTGAACATAGCCCTGAGTTTCTTTCAGGCGGTACCCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTGCGATTCTCTTGGTCCAAGCAAACTCATGTTATACTGGCAGATGAAATGGGACTCGGCAAAACCATACAAAGTATAGCCTTCTTAGCATCCCTTTTTGAAGAGGGCATTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTGAGAAACTGGGAACGAGAATTTGCAACATGGGCACCTCAAATGAACGTGGTAATGTATGTTGGATCTGCCCAAGCTCGTGCTGTTATAAGAGATTATGAATTTTACTTCCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCATATAATTAGTGAAAGCAAGCAAGACAGAATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACTTTGATACAACATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGACTCAAAAATAAGGATTCAAAATTATTTTCATCATTGAAGCAATATTCCAGCAGACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAACAACCTGGATGAACTTTTTATGCTTATGCACTTCCTCGATGCCGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAATTTAGGGATATCAACCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTGCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAGAAGGAACTTATTTTACGTGTTGAATTAAGCAACAAACAGAAAGAGTATTATAAGGCGATTTTAACCCGTAATTATCAGATATTAACTCGCCGTGGTGGTGCACAAATTTCCCTTATCAATGTTGTTATGGAATTGCGTAAGCTCTGTTGTCATCCTTACATGCTAGAAGGAGTTGAACCAGATATTGATGATCCAAAAGAAGCATATAGACAGTTGCTGGAATCATCGGGGAAGTTGCAATTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCTTGATATATTCGCAATTTCAACATATGCTGGACTTGCTTGAAGATTATTGTTCTTACAAGAATTGGCAGTATGAGAGAATAGATGGCAAAGTCGGTGGAGCTGAAAGACAAGTAAGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGTGGATTGGGGATAAACCTTGCAACCGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTGCAAGCTATGGCTAGAGCTCATCGACTTGGACAGACTAACAAGGTGTTGATATATAGGCTTATAACAAGAGGAACCATTGAAGAAAGAATGATGCAGATGACAAAAAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGGCTAAAGGCTCAAAACATCAACCAGGAAGAGTTGGATGACATCATAAGGTATGGCTCAAAGGAGTTGTTTGCAGATGAAAATGATGAAGCGGGCAAATCCCGCCAAATCCATTATGATGCTGCTGCTATCGATAGATTGCTGAATCGTGATCAAGTTGGAGATGAAGAGGCTACTGTAGATGATGAAGATGACGATGGATTTTTGAAGAATTTTAAGGTTGCAAATTTTGAGTACATTGATGAGGTTCAGGCAGCAGCAGAGGAGGCTGCACAAAAAAGAGCAAGGGAGACTATGAACAGTTCAGACAGAACCCATTACTGGGAGGAGTTGTTAAAAGATAAATATCAGGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGCAAAGGGAAGCGAAATCGAAAGATGATGGTTTCTGTTGAGGACGATGATCTAGCTGGCTTGGAAGATGTAAGCTCTGATGGTGAAGATGACAACTATGAAGCAGATCTTACTGATGGCGATTCAAATTCAACTGGAACAGTTACTGCTAGAAGGCCTTATAGAAAGAAACCTCGTGCTGATAGCACAGAGCCACTTCCTCTAATGGAAGGTGAAGGGAGATCATTTAGAGTACTTGGTTTTAATCAGAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGAATTTGATTGGAGTGACTTTACTCCCCGGATGAAGCAGAAGACTTCTGAAGAAATCAAAGATTATGGAATACTTTTCTTGACTCATATTGCTGAAGATATAACTGATTCCAGTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATACAAGATGTACTTGTAAGGATTGCAGTTCTGATGCTGATAAGGGACAAAGTAAAGTTTGCATCAGAAAATCCTGGAACTCCACTGTTTTCAGATGACATCTTACTACGTTATCCAAGTTTGAAGGGTACAAAGATATGGAAGGAGGAGCATGATTTACTTTTGCTGCGTGCTGTGTTGAAGCATGGGTATGGAAGGTGGCAGGCTATTGTTGATGATAGGCATCTCAAAGTTCAGGAGCTCATCTGTCAAGAGTTGAATCTTCCCCTCATAAATTTACCAGTAGCAGGACAGGCTAGTTCTCAGGTGCAAAATGGCACAAATTTGGCAAATACCGAAGTTCCTAGTAATCAGTCCAGGGAAAATGGTGGGATTGATGTGGCAGCTGATGGTGCACAAGGTTCCAGTGATGCTAGGAACCAAGCACAGATGTATCAAGACTCCTCCATATTATATCATTATAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAGTACTTTGGTGATCCAAAAGCAAATGAAGTACCAAATGAAGAACTTAAAAGTGAACCCAAGGCTACAAATTTTACAACTTATAAATCAGGGAACACTGACACTCAAATGATTGATCAAATGCCTGAATTGAAAGCATTAGGTGCGGAAGAAATTTCACTTGCTTGTGATAATGATCCACAACGATCAGAATTGGTCCGACTTTACAACGAGATGTGCAAGGTAGTGGAGGAAAACCCCGTGGGTGTAGCTAGAACATTGGCAAAGGAACAGGCAGAGGTCAATGTGAAGAATTTATTGCCACTAGAAACCATTTGTGAAGATATAAACCGGATTCTGTCTCCCACACAAGAACATCAGACAACTGCAGAAAAGTCAAGATTGAATTCAGCTAACAAATCAGAGGCTATCCCTCAAGATGACTGCAAACCTGATAACAACGTTGACGATGAAGATATGATGGTAACAGAATCAAAACCTGAAAATGAAGACGAGAATAATCATCAAACAAGTGTTGTGCGGGGGAGAATGGAAAGTGACATAGAAATGGATGAAGCCAAGAATGAAAACGCAGAGAAGTCGGGTGCTGGGGTCGTTCCATTGGATGATTAA 4515 0.4095 MVAASSSQGRNLSSSSLSEIGTEKALERLEEEAKTGEVVVVVRGEAAMDREAMIPCFGFPRNSESPRTRSPENLALHGFQSFWRNMSSLVERLRVRSDRRPIYNIDDSDDDADFLPRKPGIAQEKLERIDRSDAKENLCQACGESGDLLNCETCTYAYHARCLVPPIKGPVPDNWRCPECVSPLNDIDKILDCEMRPTVAADSDTNQLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAYKTFPRLKTKVNNFHRQMASVNTTDEDFVAIRPEWTTVDRILACRGDEDEKEYFVKWKELPYDECYWEFEADISAFQPEIERFNRFRSKSNKLAFIKQKSSVKDDGELRKQQKEFQQCEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIRDYEFYFPKKQKKIKKKKSGHIISESKQDRIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSNKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDPKEAYRQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLNRDQVGDEEATVDDEDDDGFLKNFKVANFEYIDEVQAAAEEAAQKRARETMNSSDRTHYWEELLKDKYQEHKVEEFNALGKGKRNRKMMVSVEDDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTVTARRPYRKKPRADSTEPLPLMEGEGRSFRVLGFNQNQRAAFVQILMRFGVGEFDWSDFTPRMKQKTSEEIKDYGILFLTHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLMLIRDKVKFASENPGTPLFSDDILLRYPSLKGTKIWKEEHDLLLLRAVLKHGYGRWQAIVDDRHLKVQELICQELNLPLINLPVAGQASSQVQNGTNLANTEVPSNQSRENGGIDVAADGAQGSSDARNQAQMYQDSSILYHYRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKANEVPNEELKSEPKATNFTTYKSGNTDTQMIDQMPELKALGAEEISLACDNDPQRSELVRLYNEMCKVVEENPVGVARTLAKEQAEVNVKNLLPLETICEDINRILSPTQEHQTTAEKSRLNSANKSEAIPQDDCKPDNNVDDEDMMVTESKPENEDENNHQTSVVRGRMESDIEMDEAKNENAEKSGAGVVPLDD* 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0556 1504 ProSitePatterns Zinc finger PHD-type signature. 139 180 IPR019786 -
Aev08g0556 1504 Gene3D - 274 326 - -
Aev08g0556 1504 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 90 1139 - -
Aev08g0556 1504 Pfam Helicase conserved C-terminal domain 694 807 IPR001650 -
Aev08g0556 1504 SMART DUF1086_2 995 1154 IPR009462 GO:0003677|GO:0006338
Aev08g0556 1504 SMART PHD_3 138 181 IPR001965 -
Aev08g0556 1504 Gene3D - 363 613 IPR038718 -
Aev08g0556 1504 Pfam PHD-finger 139 181 IPR019787 -
Aev08g0556 1504 Coils Coil 923 943 - -
Aev08g0556 1504 MobiDBLite consensus disorder prediction 1227 1242 - -
Aev08g0556 1504 CDD CD1_tandem 183 257 - -
Aev08g0556 1504 Pfam Chromo (CHRromatin Organisation MOdifier) domain 278 326 IPR023780 -
Aev08g0556 1504 Pfam Chromo (CHRromatin Organisation MOdifier) domain 201 241 IPR023780 -
Aev08g0556 1504 Gene3D - 182 273 - -
Aev08g0556 1504 SMART DUF1087_2 924 990 IPR009463 -
Aev08g0556 1504 Pfam SNF2-related domain 391 671 IPR000330 GO:0005524|GO:0140658
Aev08g0556 1504 SMART ultradead3 367 580 IPR014001 -
Aev08g0556 1504 ProSiteProfiles Chromo and chromo shadow domain profile. 277 326 IPR000953 -
Aev08g0556 1504 MobiDBLite consensus disorder prediction 988 1007 - -
Aev08g0556 1504 CDD CD2_tandem 275 326 - -
Aev08g0556 1504 Gene3D - 1121 1301 - -
Aev08g0556 1504 MobiDBLite consensus disorder prediction 1417 1437 - -
Aev08g0556 1504 CDD SF2_C_SNF 692 818 - -
Aev08g0556 1504 Pfam CHD subfamily II, SANT-like domain 1019 1151 IPR009462 GO:0003677|GO:0006338
Aev08g0556 1504 MobiDBLite consensus disorder prediction 1227 1258 - -
Aev08g0556 1504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 383 569 IPR014001 -
Aev08g0556 1504 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 90 1139 - -
Aev08g0556 1504 MobiDBLite consensus disorder prediction 988 1038 - -
Aev08g0556 1504 MobiDBLite consensus disorder prediction 1 20 - -
Aev08g0556 1504 MobiDBLite consensus disorder prediction 1439 1492 - -
Aev08g0556 1504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 858 IPR001650 -
Aev08g0556 1504 SUPERFAMILY Chromo domain-like 262 327 IPR016197 -
Aev08g0556 1504 ProSiteProfiles Chromo and chromo shadow domain profile. 185 267 IPR000953 -
Aev08g0556 1504 Pfam CHD subfamily II, DUF1087 929 987 IPR009463 -
Aev08g0556 1504 ProSiteProfiles Zinc finger PHD-type profile. 136 183 IPR019787 -
Aev08g0556 1504 SMART chromo_7 275 329 IPR000953 -
Aev08g0556 1504 SMART chromo_7 184 253 IPR000953 -
Aev08g0556 1504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 181 IPR013083 -
Aev08g0556 1504 SUPERFAMILY Chromo domain-like 151 262 IPR016197 -
Aev08g0556 1504 Gene3D - 614 838 IPR027417 -
Aev08g0556 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 604 IPR027417 -
Aev08g0556 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 862 IPR027417 -
Aev08g0556 1504 MobiDBLite consensus disorder prediction 1417 1504 - -
Aev08g0556 1504 SMART helicmild6 723 807 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0556 Aev-Chr8 3157848 3173093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0556 393 868 RAD5 or RAD16-like Gene Family AT1G02670 22.842 2.02e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aev08g0556 SNF2_N 4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0556 K11643 - gmx:100790230 2396.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0556 08 3157848 3173093 Aev08g0556 08 3157848 3173093 ECH