Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0444 ATGCTGCAAAACCTTCAAATCCCTCACTGGGATACACCTCAATGCATTGACACTAGTACTACTCTCGCCGAAGACCACCACGTGTTCTCCACCGACCATTTCAGAATGTTCCACTACAAGGTTCGAAGCTGTCCACGTGGCAGGTCCCACGACTGGACGGAGTGCCCCTACGCCCACCCCGCCGAGAAGGCCCGCCGCAGAGACCCCCGCAAGTACCATTACTCCGGCGTCCCCTGCCCCGATTTCCGCAAAGGGCATTGCCGCAAAGCCGATTCCTGCGAGTTCGCTCACGGCGTCTTCGAGTGCTGGCTCCACCCTTCCCGCTACAGGACACAGCTCTGCAAGGACGGAACCTTTTGCCGCAGGCGCGTCTGCTTCTTCGCCCACGCGCCGGATCAGCTGCGCGTACTCGACTCCAACTCCAACGACTCACCGATTCGTCAGAATAACAATGCGTCGCTCGTTTCATCGCCAACTTCGGTGCTTTATTGTTCTTCTTCCTATTTGTCAGATTCGCCGCCCTCTTCGCCTGGGGACACGCGATACGGCTTGAGTGAGTTGGTGAGCTCAATGCGGAGCGTTCAGATTGACGAGTTGGGCTCGGGCTCGGGCTCGGGCCAGATGGGCTGCATGTTTGGGTCGCCGCGTGTTGGGCCCGGGCATTTTAGATTGCCTTATGAAGAGGAACCTCCTGCTATGGAGAGGGTGGAATCTGGGAGGGACATCAGGGCGAGAATGTACGCGAAACTGAGTAAAGAGATTTCGATTAATGGGATGATGAGAAGCGATTTGGGGCTTTCTTCAGCACCTCTTCCTGATATTGGATGGATCTCTGAACTGGTGCAGTGA 849 0.5642 MLQNLQIPHWDTPQCIDTSTTLAEDHHVFSTDHFRMFHYKVRSCPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGVPCPDFRKGHCRKADSCEFAHGVFECWLHPSRYRTQLCKDGTFCRRRVCFFAHAPDQLRVLDSNSNDSPIRQNNNASLVSSPTSVLYCSSSYLSDSPPSSPGDTRYGLSELVSSMRSVQIDELGSGSGSGQMGCMFGSPRVGPGHFRLPYEEEPPAMERVESGRDIRARMYAKLSKEISINGMMRSDLGLSSAPLPDIGWISELVQ* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0444 282 PANTHER UNKEMPT FAMILY MEMBER 26 282 IPR045234 -
Aev08g0444 282 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 98 IPR000571 GO:0046872
Aev08g0444 282 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Aev08g0444 282 SMART c3hfinal6 108 131 IPR000571 GO:0046872
Aev08g0444 282 Gene3D - 74 137 - -
Aev08g0444 282 ProSiteProfiles Zinc finger C3H1-type profile. 74 100 IPR000571 GO:0046872
Aev08g0444 282 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 26 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0444 Aev-Chr8 2499902 2500750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0444 28 137 C2H2 Transcription Factor Family AT5G12850 70.000 1.50e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev08g0444 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0444 - K23048 adu:107461217 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0444 08 2499902 2500750 Aev08g0444 08 2499902 2500750 ECH