Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0442 ATGGAGGAATACACTAACAACAGCCACATGAGTGAAAGCACAGGTCCGGGTCCAAGGGCAAGTTTCTTGTACACTTCATCAATTGGTGGTGGTTCAAGCGTAGGGAACAACCACCATCAGCTTCCAATCAACACTACTACCTTTCATCTTCTTCAATCTGGCGGCGGCGGTGGTGGATCCGATCACTGTTTCCAAGCCGATCAAGTGGCGCCACACCCTGCTGAAGTCAAAACAGAATCCAACAACAACAGCAACAGCGCGCAGTTCCACCCACAGATTTTCCAATATCCTCTCATGAGAGGGAATCTTAACCACCACCACGCGCTGCTGCAGCATCCTCATCTTCTAAGTCAGGGAGGGAACCAAGACTCCAACGAAGTTGAAGCCATCAAAGCCAAAATCATTGCTCACCCTCACTACTCCAATCTACTCGAAGCTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCCGAAGTGGTGGCGCGTTTGGCGGCGGCTAGGCAAGATTTTGAGGCACGACAGCGGTCTTCGGTTAGTTCCAGGGAAAGTTGCAAGGATCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATCGGGAGGAATTGACAAGGCCGATACAAGAGGCCATGGATTTCATGCGCAGGATTGAAACTCAGCTCAATATGCTTTGCAATGGACCCCTCCGCATCTTCTCTGATGATAAATGTGAAGGCGGTGGTTCATCGGAAGAGGAGCAAGAAAATAGTGGCGGGGAATCAGAACTGCCGGAGATTGATCCCCGAGCAGAAGACCGTGAGCTGAAAAACCACTTGCTGAAGAAGTACAGTGGCTACCTTAGCAGCCTTAAGCAAGAACTGTCCAAGAAAAAGAAAAAAGGAAAGCTGCCTAAAGAGGCAAGGCAAAAGCTACTCAACTGGTGGGAATTGCATTACAAGTGGCCATATCCTTCGGAATCGGAGAAGGTGGCGCTGGCAGAATCAACCGGATTAGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGCGACACTGGAAGCCATCGGAGGACATGCAGTTCATGGTGATGGACGGGCTGCATCCCCAGAACGCATCTCTTTATATGGATCATGCCCACTATATGACCACTGCAGATGCACATTACCGTTTAGCTCCGTAA 1179 0.4894 MEEYTNNSHMSESTGPGPRASFLYTSSIGGGSSVGNNHHQLPINTTTFHLLQSGGGGGGSDHCFQADQVAPHPAEVKTESNNNSNSAQFHPQIFQYPLMRGNLNHHHALLQHPHLLSQGGNQDSNEVEAIKAKIIAHPHYSNLLEAYMDCQKVGAPPEVVARLAAARQDFEARQRSSVSSRESCKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFSDDKCEGGGSSEEEQENSGGESELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNASLYMDHAHYMTTADAHYRLAP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0442 392 Pfam ELK domain 271 292 IPR005539 GO:0003677
Aev08g0442 392 MobiDBLite consensus disorder prediction 1 20 - -
Aev08g0442 392 MobiDBLite consensus disorder prediction 240 265 - -
Aev08g0442 392 CDD homeodomain 303 355 IPR001356 GO:0003677
Aev08g0442 392 SMART KNOX2_2 179 230 IPR005541 GO:0003677|GO:0005634
Aev08g0442 392 Pfam Homeobox KN domain 311 350 IPR008422 GO:0003677|GO:0006355
Aev08g0442 392 ProSiteProfiles 'Homeobox' domain profile. 291 354 IPR001356 GO:0003677
Aev08g0442 392 SMART ELK_2 271 292 IPR005539 GO:0003677
Aev08g0442 392 Pfam KNOX1 domain 129 170 IPR005540 GO:0003677|GO:0005634
Aev08g0442 392 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 381 - -
Aev08g0442 392 SMART HOX_1 293 358 IPR001356 GO:0003677
Aev08g0442 392 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 381 - -
Aev08g0442 392 ProSiteProfiles ELK domain profile. 271 291 IPR005539 GO:0003677
Aev08g0442 392 Gene3D - 288 361 - -
Aev08g0442 392 SUPERFAMILY Homeodomain-like 292 366 IPR009057 -
Aev08g0442 392 SMART KNOX1_2 128 172 IPR005540 GO:0003677|GO:0005634
Aev08g0442 392 Pfam KNOX2 domain 184 229 IPR005541 GO:0003677|GO:0005634
Aev08g0442 392 ProSitePatterns 'Homeobox' domain signature. 329 352 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0442 Aev-Chr8 2478662 2482479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0442 60 392 Homeobox Transcription Factor Family AT4G08150 68.328 8.59e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aev08g0442 KNOX2 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0442 - - gmx:100807602 559.681