Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0431 ATGAACTTGAAGATGGATTCAGATAAAGCAAAGCTGTTCGTTGGGGGTATCTCTCGTGACACCACCGAACTCGTTCTCAGAGACCACTTCGCTAAGTACGGCGCCGTTTTGGACTCCACAATCTCCGTCGACCGCATTACTCGAAGCCCTAGAGGCTTCGGCTTCGTTACCTTCTCCGATCTCTCTGCAGCTGATAAAGCTCTTCAGGACACTCATGTCATACTCGGAAGAACGGTAGAAGTGAAAAAAGCAATACCCAGAAGTGAACAGCAGCAACATCAAAACCACGTACAGAGTAGAGGTGTGAATAACTATAGTAGTAATGACTATAGCATTGACAACGTTAGGACTAAAAAGATTTTCGTAGGTGGTTTGTCAGCTGGTATATCTGAGGAGGAATTCAAGAAATACTTTGAGAGGTTTGGTAGGATAACCGATGTAGTGGTGATGCAGGACAGCGTAACTCACCGGCCAAGGGGGTTTGGCTTCATCACTTTCGACTCCGAGGAATCAGTTCAAAATGTCATGGTGAAAAGTTTTCACGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGTTATGACGGTTTCAATAATAGGTTAAGATATAGAAATGAAAGAGGAGCCTCTAAAACTTTCCCTCCTTACAGTCCAAGTTACCCACTCCCTGGCTTTGCTCCTCCTCAGCCTTGGTATAGTAGTGATGGAGTGTATGTCTATGGATCAAGCAACTATGGTTGGTACCCTATGGGTGGGTACGGGGGTAATGGATATGCTGTTCCAGCTGATTATTCTAGGAACTTCTGGTATGCGCCCATGATCACTGGTCCTCAGGCATCCCAGGTGCCTTATGCCAATGCTTCGCCGAGTGTTGCATATATGGGTGGTAGGGTTGGAGTAGTAGGTATTGGGGCCGGAGCCAGGGGATACAATGGAATTCTTGGGTCTGCAACAAATTTGAAATTTGGTCAACCTTTTACTGCCAATGGATTTGTTCCAGGCAATGTGACATCGCCTCAAGGTGTGAAGCAGGGTGTTGACTCTTCAAGTTTGAGAGGAACTAATGGTGAAATTTCTAGTTGA 1107 0.4616 MNLKMDSDKAKLFVGGISRDTTELVLRDHFAKYGAVLDSTISVDRITRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQQHQNHVQSRGVNNYSSNDYSIDNVRTKKIFVGGLSAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFNNRLRYRNERGASKTFPPYSPSYPLPGFAPPQPWYSSDGVYVYGSSNYGWYPMGGYGGNGYAVPADYSRNFWYAPMITGPQASQVPYANASPSVAYMGGRVGVVGIGAGARGYNGILGSATNLKFGQPFTANGFVPGNVTSPQGVKQGVDSSSLRGTNGEISS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0431 368 SUPERFAMILY RNA-binding domain, RBD 6 110 IPR035979 GO:0003676
Aev08g0431 368 SUPERFAMILY RNA-binding domain, RBD 108 216 IPR035979 GO:0003676
Aev08g0431 368 Gene3D - 116 197 IPR012677 -
Aev08g0431 368 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 358 - -
Aev08g0431 368 Gene3D - 2 115 IPR012677 -
Aev08g0431 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Aev08g0431 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Aev08g0431 368 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 358 - -
Aev08g0431 368 MobiDBLite consensus disorder prediction 345 368 - -
Aev08g0431 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Aev08g0431 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Aev08g0431 368 SMART rrm1_1 11 82 IPR000504 GO:0003723
Aev08g0431 368 SMART rrm1_1 119 191 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0431 Aev-Chr8 2377015 2378347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0431 12 257 Eukaryotic Initiation Factors Gene Family AT2G36660 25.564 1.25e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0431 K14411 - gmx:100786665 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0431 08 2377015 2378347 Aev08g0431 08 2377015 2378347 ECH