Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0362 ATGGCGCAAGTTCAAATGAGCCCTAATGCGAATGGTGACGCCGCCGCACCTGCGACCGCGAGCCAGTCGGTGATGACGTCTCTCTACGTCGGGGATCTCGACCGCAACGTCAAGGATCCTCAGCTCTACGATCTTTTCAACCAGATCGGCCAGGTTGTTTCCGCTCGCGTCTGCAGGGACTTGGCCACCCAGCAATCCCTCGGTTACGGCTACGTCAATTTCAGCAACCCTCAAGACGCGGCAAGAGCCTTGGATGTCCTGAATTTCACTCCACTGAATAACAAACCTATTAGGATCATGTATTCTCATCGTGACCCTAGCGCCCGCAATAGCGGTCATGCTAACATTTTTATCAAGAATTTGGATAAGTCGATCGATCACAAAGCTCTGCACGATACCTTTTCGTCCTTTGGGGCCATTCTTTCGTGCAAGATAGCCACGGATGCTTCTGGCCAGTCCAAAGGATTTGGTTTTGTACAATTTGAGAAGGAGGAGTCTGCACAGAGTGCAATTGACAAGTTGAATGGAATGTTTTTGAATGATAAGCAGGTCTACGTAGGTCATTTTCTTAGAAAGCAGGATAGGGAGAGTGTTTTGAACGCTAACACAAAGTTTAGTAACGTTTATGTGAAGAACCTGTCGGAGTTGACAACGGATGATGACTTGAAGAAAACTTTTGGAGAGTATGGGACAATTACTAGTGTTGTAGTGATGAGAGACGTAGATGGAAAATCAAAATGTTTTGGTTTTGTCAATTTTGAAAATGCTGATGACGCTGCTAAAGCTGTTGAGGCACTTAATGGAAAGAAAATTGATGATAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAAAGAGAGGTTGAGTTGAAAGAGCGATTTGAGCAGAGTATGAAGGAAGCTGCTGACAAATTTCAAGGTGCTAACTTGTATCTCAAGAACTTGGATGATAGCATCAGCGATGAAAAGCTCAGGGAACACTTCTCTGAGTTCGGTACAATAACTTCGTGCAAGATTATGCGTGATCCACAAGGAATTAGTAGAGGATCTGGATTTGTTGCATTTTCAACTCCTGAGGAAGCTGCTCGAGCCCTCGGTGAGATGAAAGGTAAAATGATTGCTGGCAAACCTCTATATGTTGCCCTTGCACAGAGAAAAGAAGAGAGAAGGGCAAAGCTGCAGGCACAGTTTTCTCAAATGACAAATGTTACAATGCCTCATTCTGTTGCACCTCATATGCCACTTTATCCTCCTAGGGCCATGGGTCTTGGGCATCCCTTTATGTATGGGCAAGCACCTCCAGCTGTCATTCCTCAAGCTGGATTTATTCCTGGGATGAGGCCAGGTGCTCCAATGCCAAGCTTCTTTGTTCCTGTGGTTCAGCAGGGTCAACAAGGCCAGCGCCCAGGTGGACGCCGAGGAACTGGTCCTGTGCAACAACCCCAGCAGCCGGTGCCGATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGGCTATCGTTACCCATCTGGTCGCAACATGCAGGATGTTCCAATGCTCGCAGTCAATTATGACATGGGTGCTCTGCCCATCCGAGATGCCATGGGACAGCCATTGCCCATTCAGGCCTTGGCTACAGCCCTTGCAAATGCTCCTCCTGGAAAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCACTTGTTGATAAGCTGGAACATGATGCGGCAGCAAAGGTTACAGGCATGCTTCTGGAGATGGACCAGCCTGAAGTACTGCATCTGATTGAGTCGCCGGATGCTCTCAAGGCGAAAGTTGCCGAGGCCATGGATGTTTTAAAAAACGTTTCTCAGCAGCAAGCCAATACCCCAGCTGATCAAATGGCTTCACTCTCTCTTAATGACAATCTGGTCTCCTAG 1899 0.4766 MAQVQMSPNANGDAAAPATASQSVMTSLYVGDLDRNVKDPQLYDLFNQIGQVVSARVCRDLATQQSLGYGYVNFSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSARNSGHANIFIKNLDKSIDHKALHDTFSSFGAILSCKIATDASGQSKGFGFVQFEKEESAQSAIDKLNGMFLNDKQVYVGHFLRKQDRESVLNANTKFSNVYVKNLSELTTDDDLKKTFGEYGTITSVVVMRDVDGKSKCFGFVNFENADDAAKAVEALNGKKIDDKEWYVGKAQKKSEREVELKERFEQSMKEAADKFQGANLYLKNLDDSISDEKLREHFSEFGTITSCKIMRDPQGISRGSGFVAFSTPEEAARALGEMKGKMIAGKPLYVALAQRKEERRAKLQAQFSQMTNVTMPHSVAPHMPLYPPRAMGLGHPFMYGQAPPAVIPQAGFIPGMRPGAPMPSFFVPVVQQGQQGQRPGGRRGTGPVQQPQQPVPMMQQQMLPRGRGYRYPSGRNMQDVPMLAVNYDMGALPIRDAMGQPLPIQALATALANAPPGKQRTMLGEALYPLVDKLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLKNVSQQQANTPADQMASLSLNDNLVS* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0362 632 MobiDBLite consensus disorder prediction 611 632 - -
Aev08g0362 632 CDD RRM2_I_PABPs 112 188 IPR045305 -
Aev08g0362 632 PANTHER RNA BINDING PROTEIN 15 616 - -
Aev08g0362 632 Gene3D - 114 188 IPR012677 -
Aev08g0362 632 Gene3D - 530 613 - -
Aev08g0362 632 PANTHER POLYADENYLATE-BINDING PROTEIN 15 616 - -
Aev08g0362 632 SMART poly_2 546 609 IPR002004 GO:0003723
Aev08g0362 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Aev08g0362 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Aev08g0362 632 Gene3D - 293 398 IPR012677 -
Aev08g0362 632 Gene3D - 190 292 IPR012677 -
Aev08g0362 632 Gene3D - 1 113 IPR012677 -
Aev08g0362 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 534 611 IPR002004 GO:0003723
Aev08g0362 632 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 27 607 IPR006515 GO:0003723
Aev08g0362 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Aev08g0362 632 CDD RRM3_I_PABPs 205 284 - -
Aev08g0362 632 CDD RRM4_I_PABPs 308 386 - -
Aev08g0362 632 SUPERFAMILY RNA-binding domain, RBD 205 289 IPR035979 GO:0003676
Aev08g0362 632 MobiDBLite consensus disorder prediction 463 485 - -
Aev08g0362 632 CDD RRM1_I_PABPs 27 106 - -
Aev08g0362 632 SMART rrm1_1 115 187 IPR000504 GO:0003723
Aev08g0362 632 SMART rrm1_1 27 100 IPR000504 GO:0003723
Aev08g0362 632 SMART rrm1_1 310 382 IPR000504 GO:0003723
Aev08g0362 632 SMART rrm1_1 207 279 IPR000504 GO:0003723
Aev08g0362 632 SMART rrm2_1 310 382 IPR003954 GO:0003676
Aev08g0362 632 SMART rrm2_1 207 279 IPR003954 GO:0003676
Aev08g0362 632 SMART rrm2_1 115 187 IPR003954 GO:0003676
Aev08g0362 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Aev08g0362 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Aev08g0362 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Aev08g0362 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Aev08g0362 632 SUPERFAMILY PABC (PABP) domain 483 625 IPR036053 GO:0003723
Aev08g0362 632 Pfam Poly-adenylate binding protein, unique domain 542 606 IPR002004 GO:0003723
Aev08g0362 632 SUPERFAMILY RNA-binding domain, RBD 26 195 IPR035979 GO:0003676
Aev08g0362 632 Coils Coil 384 404 - -
Aev08g0362 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Aev08g0362 632 SUPERFAMILY RNA-binding domain, RBD 306 400 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0362 Aev-Chr8 1954950 1957882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0362 1 627 Eukaryotic Initiation Factors Gene Family AT4G34110 65.789 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0362 K13126 - gmx:100784442 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0362 08 1954950 1957882 Aev08g0362 08 1954950 1957882 ECH