LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev08g0320	ATGGCTATCCGCGTTACCTTTTCCTTCTCCGGCTACGTGGCCCACAACCTCGTTTCCACGGCCACCTCTCGCGTCGCCAATTCCCGCTGCGTCCAAGAATGCTGGATCCGTTCTCGCCTCTTCGGAGCCAACCAGAAACACGATCTTGATCCCTCCGCCAGCGTTCGCAATTTCCATTCCGATCTCCGAAGGCCCAAATTCAATTCCTGGCCCAAGAAATCTGCTGCGTCCTGTGCCTACACCACCATCGCCGGTGAGATTATCGGCGATAACTGCAAGAACCCGATCATACTGGGCCTGATCTCTGTTATGAAATCAACGATGGGGGTTTCTGGGTCGTCAACGGCTGCCATGGGCATTTTCGGTATTTCGCCCATCAAGACCACTTCGATCATACCCTTCTTGCAGGGTTCGAAGTGGCTTCCTTGTAACGAGTCTATTCCTGACCCCACAAACTGGGAGGTCGACAAAGGCGGAACGCGGCGTTTCAAGGAAGGCACCGTCGCCGCCGCTGATTCTGGCAAGACCGGTTGGCTCTCACGGATGTTGAACGTGTGCTCTGAGGATGCTAAGGCCGTGTTCACTGCCGTCACCGTTAGCTTGCTCTTCAAGTCATTCTTGGCTGAACCTAGGTCCATTCCCTCTGCTTCTATGTACCCAACTCTCGAAGTGGGTGACCGTATTATGGCCGAGAAGGTTTCTTTCTTCTTTAGAAAGCCTAATGTTTCAGATATTGTGATTTTTAAGGCGCCTCCACAATTACAGGAAGCTGGTGTCTCTTCTAATGAAGTGTATATCAAAAGGATTGTGGCCAAGGCTGGGGACACTGTTGAAGTTCGTGACGGGAAACTCCTGGTGAACGGTGTTGCTGAAGAAGAGGAATTCGTTCAAGAGCCTCTTAACTATAAGTTGGAGCCAGTGGTTGTGCCAGAAGGATGTGTTTATGTTTTAGGAGATAATCGTAATAAAAGCTATGATTCTCATAACTGGGGTCCACTCCCTGTTGAGAACATTATTGGTAGATCCATGTTCCGGTACTGGCCTCCATCCAAAGTATCTCACCCTGACTTGCATCATAAGCTTAAACCTGCACCAGGAACCAACGCCGTTGCTGTTTCTTGA	1122	0.5036	MAIRVTFSFSGYVAHNLVSTATSRVANSRCVQECWIRSRLFGANQKHDLDPSASVRNFHSDLRRPKFNSWPKKSAASCAYTTIAGEIIGDNCKNPIILGLISVMKSTMGVSGSSTAAMGIFGISPIKTTSIIPFLQGSKWLPCNESIPDPTNWEVDKGGTRRFKEGTVAAADSGKTGWLSRMLNVCSEDAKAVFTAVTVSLLFKSFLAEPRSIPSASMYPTLEVGDRIMAEKVSFFFRKPNVSDIVIFKAPPQLQEAGVSSNEVYIKRIVAKAGDTVEVRDGKLLVNGVAEEEEFVQEPLNYKLEPVVVPEGCVYVLGDNRNKSYDSHNWGPLPVENIIGRSMFRYWPPSKVSHPDLHHKLKPAPGTNAVAVS*	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev08g0320	373	CDD	S26_SPase_I	209	341	IPR019533	GO:0004252\|GO:0006465
	Aev08g0320	373	SUPERFAMILY	LexA/Signal peptidase	205	354	IPR036286	-
	Aev08g0320	373	PANTHER	SIGNAL PEPTIDASE I	1	355	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Aev08g0320	373	Gene3D	Umud Fragment, subunit A	203	362	-	-
	Aev08g0320	373	ProSitePatterns	Signal peptidases I serine active site.	215	222	IPR019756	GO:0004252\|GO:0016021
	Aev08g0320	373	ProSitePatterns	Signal peptidases I signature 3.	314	327	IPR019758	GO:0004252\|GO:0016021
	Aev08g0320	373	Pfam	Signal peptidase, peptidase S26	190	347	IPR019533	GO:0004252\|GO:0006465
	Aev08g0320	373	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	355	-	-
	Aev08g0320	373	TIGRFAM	sigpep_I_bact: signal peptidase I	192	348	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Aev08g0320	373	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	309	328	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Aev08g0320	373	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	206	222	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Aev08g0320	373	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	265	277	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev08g0320	Aev-Chr8	1728878	1730682	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev08g0320	218	348	MADS-box Gene Family	AT1G29960	31.061	3.02e-13	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev08g0320	K03100		-	gmx:100817525	531.561

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev08g0320	08	1728878	1730682	Aev08g0320	08	1728878	1730682	ECH