Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0299 ATGCAGATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTGCTCCAACAACAGTAACAACGATGCTGGCAATTTTGAATGCAACATTTGCTTTGAGTTAGCTCAAGACCCAATCATCACTCTCTGTGGTCACCTCTTTTGCTGGCCATGTCTTTACAAATGGCTTCACTTCCACTCGCAGGCGAAAGAATGCCCCGTGTGCAAGGCACTCATTGAGGAGGAGAAGCTGGTTCCGTTATACGGGAGAGGAAAGACTTCCACTGACCCAAGATCAAAATCTATCCCGGGTGTTAATATCCCACATCGTCCTGCTGGTCAGAGACCTGAAACTGCTCCTCCTCCTCCTCCCGAGCCGAATCATCATTTTCATCATCATGGGTTCGGATTCATGGGTGGGTTGGGAGGCTTTGCCCCGATGGCAACAGCAAGACTTGGGAATTTCACACTGTCTGCGGCATTTGGTGGTTTCATACCATCCTTGTTCAACTTTCAGTTGCATGGGTTTCATGATGGGTCCATGTATGGTGGAGCACCTGGTTATCCTTATCGGTTTTCTAATTCATTTCATGGTGTCCATGCTCATAGATATCCTCTGCATGCTGGTCAAGGGCAACAGGACTATTTTCTCAAGAGGCTGCTTCTGTTTGTCATTTTTTGCGTTGTTCTTGCTTTGATTTGGCAATAG 702 0.4786 MQMASGFGESTSRSPPSPSCSNNSNNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQAKECPVCKALIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPPPEPNHHFHHHGFGFMGGLGGFAPMATARLGNFTLSAAFGGFIPSLFNFQLHGFHDGSMYGGAPGYPYRFSNSFHGVHAHRYPLHAGQGQQDYFLKRLLLFVIFCVVLALIWQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0299 233 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Aev08g0299 233 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Aev08g0299 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aev08g0299 233 SMART ring_2 33 73 IPR001841 -
Aev08g0299 233 Pfam Zinc finger, C3HC4 type (RING finger) 31 78 - -
Aev08g0299 233 SUPERFAMILY RING/U-box 30 86 - -
Aev08g0299 233 MobiDBLite consensus disorder prediction 88 124 - -
Aev08g0299 233 PANTHER OS12G0636000 PROTEIN 4 233 - -
Aev08g0299 233 MobiDBLite consensus disorder prediction 1 23 - -
Aev08g0299 233 CDD RING-HC_AtRMA_like 31 75 - -
Aev08g0299 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0299 Aev-Chr8 1631379 1632608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0299 21 232 C3H Transcription Factor Family AT2G23780 60.648 3.42e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0299 K10666 - gmx:100527488 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0299 08 1631379 1632608 Aev08g0299 08 1631379 1632608 ECH