Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0229 ATGGCTCGAGGGAAGATCCAGATCAAGAGGATAGAGAACACGACCAACAGGCAGGTGACTTACTCGAAACGGCGCAACGGGCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCCATTATCATGTTCTCCAGCACCGGCAAGCTCCACGAGTACATTAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAGTACCAGATGACTGTAGGAATTGATCTCTGGAACTCCCACTATGAGAATATGCAAGAAAACTTGAGGAAGCTGAAAGAGGTGAACAGGAATCTTCGCAAGGAGATAAGGCAGAGGATGGGAGATTGTCTAAACGATCTGAGCATAGAAGAACTTAAGCTCCTTGAGGATGAAATGGACAACGCCGCCAAGCTTATTCGCGACCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAACAACGAGAATGATGTGCATAGCAGACTCCTCCGTGATTTGGATGCAAGAACAGAAGATCCACGCTATGGAATGGTGGAGAACGGAGGAGGGGAGTATGAATCTGTGATAGGATTCTCAAATTTAGGTCCTCGCATGTTTGCACTGAGCCTACAGCCTAATGCCCATAGCGGAGCAGCACCCTCTGATCTTACTACTTACCCCTTACTTTTCTAG 678 0.472 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTVGIDLWNSHYENMQENLRKLKEVNRNLRKEIRQRMGDCLNDLSIEELKLLEDEMDNAAKLIRDRKYKVITNQIDTQRKKFNNENDVHSRLLRDLDARTEDPRYGMVENGGGEYESVIGFSNLGPRMFALSLQPNAHSGAAPSDLTTYPLLF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0229 225 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Aev08g0229 225 Coils Coil 114 134 - -
Aev08g0229 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev08g0229 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev08g0229 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev08g0229 225 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev08g0229 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev08g0229 225 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Aev08g0229 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev08g0229 225 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Aev08g0229 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev08g0229 225 Coils Coil 77 111 - -
Aev08g0229 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Aev08g0229 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev08g0229 225 PANTHER APETALA3 1 222 - -
Aev08g0229 225 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0229 Aev-Chr8 1293482 1295792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0229 1 224 MADS-box Gene Family AT3G54340 57.328 7.18e-95 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev08g0229 K-box 7.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0229 K09264 - gmx:547720 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0229 08 1293482 1295792 Aev08g0229 08 1293482 1295792 ECH
Aev05g0456 05 3190213 3191983 Aev08g0229 08 1293482 1295792 ECH