Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0204 ATGTCGACTTCGGGCGAGGATCAAAGCCGCCCTCACCACTTATCACCATTCAAGTTCCAGCTGCTGCATTCCCATTCCCATCCCCACATAATTCCTTCCTCTCATTCTCCTTTTCCTAACCTATCCTTGACTCGCACATACGAAATCAATAGTTTCAAGTCGCAGACGAGTAATGTTGAAGTACCTGCTCCTACTCTGCCTCCAAACAATACAGTTAATCTTCCTACACTTCAGACGGAGCCTCCCGTAAGAGCAAAAGTTCAAAGTAAATCAAAACTTGCAAGAAATGCAAAAGCTGGGACTACTCACATATCTAATACTGAATCTCCTAATTCGACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTTAGCTTGATTGAGGAGGCGACTGATGGTACCCTGGATCTAAATAAAACTGCTGAGGTCTTGGAGGTTCAGAAAAGGAGGATTTATGATATTACAAATGTCCTCGAAGGAGTTGGGTTAATAGAGAAAACTTCAAAGAACCATATACGATGGAAGGGATGCAATGGACATGGGCCAAGAGAACTACAGGAACAAGTTGCTAGAGTAAAGGCTGAAGTTAAAAGTTTATATGCCGAGGAATCTGTACTTGAGGATCGTATAAGGACAAAGCAAGAGCTTCTAAGAAATCTGGAGGAAAGTGAAAACTCTAGAAAGTACCTTTTCCTTACCAAGGAAGATATTCTTAGCCTTCCATGCTTCCAGGGCCAAGAACTCATTGTAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCAGACGAGGAGTTAGGTTTCCGGCAAAGGCAATACAAAATGACTGTAAGAAGTGCCACTGGACCAATATATCAGTACCTCTTGAGCAAGCATGGCCGTGAGTTTGAGGATGATAGTGTCAAACAGGTTAAATTAGTGGATCGATCATGGAATAGCGAGCACTGCAGAATAAGGGGTATCGGATCATTAGAAAGTCAAGGTGATCTGAAAAATCCTTCCCATAGTTTCAGATCGTTGGGCTCAGAGGCATTTGGAATTGAAGAAATTACTCCAGATTTTGAAATCAATGATGACTATTGGTTTCAATCAGATCCTGGAGTTCCCCTATCAGAATTGTGGGGTACTAGCAATAACTTGTAA 1173 0.4211 MSTSGEDQSRPHHLSPFKFQLLHSHSHPHIIPSSHSPFPNLSLTRTYEINSFKSQTSNVEVPAPTLPPNNTVNLPTLQTEPPVRAKVQSKSKLARNAKAGTTHISNTESPNSTAVNNCRYDSSLGLLTKKFVSLIEEATDGTLDLNKTAEVLEVQKRRIYDITNVLEGVGLIEKTSKNHIRWKGCNGHGPRELQEQVARVKAEVKSLYAEESVLEDRIRTKQELLRNLEESENSRKYLFLTKEDILSLPCFQGQELIVIKAPKASFIEVPDPDEELGFRQRQYKMTVRSATGPIYQYLLSKHGREFEDDSVKQVKLVDRSWNSEHCRIRGIGSLESQGDLKNPSHSFRSLGSEAFGIEEITPDFEINDDYWFQSDPGVPLSELWGTSNNL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0204 390 Coils Coil 211 234 - -
Aev08g0204 390 PANTHER TRANSCRIPTION FACTOR E2F 18 386 IPR015633 GO:0000978|GO:0006357
Aev08g0204 390 SUPERFAMILY "Winged helix" DNA-binding domain 119 182 IPR036390 -
Aev08g0204 390 SUPERFAMILY E2F-DP heterodimerization region 195 301 IPR037241 -
Aev08g0204 390 CDD E2F_DD 195 302 IPR032198 GO:0046983
Aev08g0204 390 PANTHER TRANSCRIPTION FACTOR E2FC 18 386 - -
Aev08g0204 390 Gene3D - 191 302 - -
Aev08g0204 390 Gene3D - 114 186 IPR036388 -
Aev08g0204 390 Pfam E2F transcription factor CC-MB domain 201 299 IPR032198 GO:0046983
Aev08g0204 390 MobiDBLite consensus disorder prediction 58 77 - -
Aev08g0204 390 Pfam E2F/DP family winged-helix DNA-binding domain 121 184 IPR003316 GO:0005667|GO:0006355
Aev08g0204 390 SMART E2F_TDP_2 119 184 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0204 Aev-Chr8 1130968 1134142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0204 2 389 E2F-DP Transcription Factor Family AT1G47870 42.755 1.31e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aev08g0204 E2F_CC-MB 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0204 K06620 - gmx:100797301 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0204 08 1130968 1134142 Aev08g0204 08 1130968 1134142 ECH