Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0177 ATGGCTAAACCCAGCATGTTTATTTTGGCCAGCTTCATCGTCTTATTATCCTTTCACTGTTTCACAATCAATAATACATGTGCCTTCTCACCTTCTGGATGGACCAGAGGCCACGCCACTTTTTATGGAGGTAGCGATGCTTCGGGGACAATGGGAGGGGCTTGTGGGTATGGGAATCTGTATTCAACAGGGTATGGAACAAGAACTGCGGCATTAAGTACTGCTCTGTTTAACGATGGAGCTTCGTGTGGGGAATGCTACAAAATCATATGTGATTTTCATGCAGACCCCAAGTGGTGTGTCAAAGGAACATCTGTCACCATAACTGCAACAAACTTCTGCCCTCCCAATTTCGCTCTTCCCAACAACAATGGAGGTTGGTGCAACCCACCGCTCAAGCATTTCGATATGGCTCAACCCGCGTGGGAGAAGATCGGCATTTATAGAGGTGGGATCGTGCCCGTGCTGTTCCAGAGAGTTCCATGCAAGAAGAAGCACGGAGGGGTGAGGTTCAGTGTGAATGGAAGAGACTACTTTGAGCTTGTATTGATAAGCAATGTGGCAGGGGCTGGATCTATCCAATCTGTGTCCATTAAAGGCTCGAAAACCGGGTGGATGGCTATGTCAAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGCCAATCTTTGTCCTTTAAGGTCACAACCACTGATGGAGTTACTAGACTCTTCCAACAAGTGGTTCCATCAAATTGGGCATTTGGCCAGAGTTTCACTAGCAGAGTCCAGTTCTAA 786 0.4695 MAKPSMFILASFIVLLSFHCFTINNTCAFSPSGWTRGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIICDFHADPKWCVKGTSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKKHGGVRFSVNGRDYFELVLISNVAGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGVTRLFQQVVPSNWAFGQSFTSRVQF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0177 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Aev08g0177 261 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Aev08g0177 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Aev08g0177 261 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Aev08g0177 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Aev08g0177 261 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Aev08g0177 261 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Aev08g0177 261 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Aev08g0177 261 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Aev08g0177 261 Pfam Lytic transglycolase 69 156 IPR009009 -
Aev08g0177 261 Gene3D - 168 261 IPR036749 -
Aev08g0177 261 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Aev08g0177 261 SMART dpbb_1 69 157 IPR007112 -
Aev08g0177 261 PANTHER EXPANSIN-A15 12 261 IPR002963 GO:0009664
Aev08g0177 261 Gene3D - 20 163 IPR036908 -
Aev08g0177 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Aev08g0177 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 167 IPR007112 -
Aev08g0177 261 PANTHER EXPANSIN 12 261 - -
Aev08g0177 261 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Aev08g0177 261 SUPERFAMILY Barwin-like endoglucanases 33 186 IPR036908 -
Aev08g0177 261 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Aev08g0177 261 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Aev08g0177 261 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Aev08g0177 261 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Aev08g0177 261 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Aev08g0177 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0177 Aev-Chr8 1002188 1003173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0177 69 261 Expansin Gene Family AT1G20190 82.383 3.80e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0177 - - gmx:100527629 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0177 08 1002188 1003173 Aev08g0177 08 1002188 1003173 ECH
Aev07g0663 07 4186765 4188656 Aev08g0177 08 1002188 1003173 PCT