Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0161 ATGAATCCATGGATATTGTTTTGGCTGTTGGTGAAGGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTGTACGTGGAGGTTACGAGGAGAAGTGGCTTTGCGAAGGGATTTTAATTAATTTTTTTTTTAAAGTGAAGGTGGTTGCAGAGAAGAAATGGAGGGAAGTGGGTAGTGTGTTCAGGTTCTCAGCGACCACCACAAGCGCTTCTTTCGTGCTGAGGAAGCACTACCGCAGCCTTCTCTACCATTACGAGCAGGTTCATTTCTTCAAAGTTCGTGGTCCTATCCACACTCCATCTGCAGATACTTTTTCTGGCAGCAATCAGTCATGGAGACCTGAACTGGCTATAGTCGAATATTCTCCCAAGCCAGTGAACCATAATCAAGATTCCCAAGCTCAAGATACTTCATGTCTTTCAGGGAGTGGAACGATTGAGGGAAAATTCGAGTGTGGTTATATAGTTTCAGTGAAACTGGGTTCAGAGGTTCTTAGAGGAGTTCTTTACCATCCTGAGCAATCGACTCCTCCACCATTGATTCCACGATATGACAATGCCATTGTGCCTTACAATCGCAAAGCTCGCCATTCTGGTCGTCGTAGGAGGAGGAACAAAAGAAAGTGGGATCCTAACTACCCAAAGCCAAATAGGAGTGGATACAACTTCTTCTTTGCTGAAAAGCATTACAAGCTCAAATCCCTCTATCCAAACAGAGAGAGAGAGTTCACCAAAATGATTGGCCAGTCATGGAATAATCTTAGCCAAGAGGAAAAAGTGGTTTACCAGAACATTGGGTTAAGAGACAAAGAAAGGTACAAGAGGGAGTTGAGGGAGTACAAAGAAAAAATGAAGCATATGCAGAACGTGAACGTAGGAGTTGGGTCGTCCATAAATCTCAATGGTGGCCTTTATGGCATTGGCAGCGAAAGAATGACTTAG 948 0.4409 MNPWILFWLLVKDSCDWREGAGFARSVRGGYEEKWLCEGILINFFFKVKVVAEKKWREVGSVFRFSATTTSASFVLRKHYRSLLYHYEQVHFFKVRGPIHTPSADTFSGSNQSWRPELAIVEYSPKPVNHNQDSQAQDTSCLSGSGTIEGKFECGYIVSVKLGSEVLRGVLYHPEQSTPPPLIPRYDNAIVPYNRKARHSGRRRRRNKRKWDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWNNLSQEEKVVYQNIGLRDKERYKRELREYKEKMKHMQNVNVGVGSSINLNGGLYGIGSERMT* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0161 315 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 216 283 IPR009071 -
Aev08g0161 315 SMART bright_3 18 93 IPR001606 GO:0003677
Aev08g0161 315 Pfam HMG (high mobility group) box 216 283 IPR009071 -
Aev08g0161 315 MobiDBLite consensus disorder prediction 196 211 - -
Aev08g0161 315 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 49 292 - -
Aev08g0161 315 Gene3D High mobility group box domain 200 296 IPR036910 -
Aev08g0161 315 SUPERFAMILY HMG-box 213 288 IPR036910 -
Aev08g0161 315 SUPERFAMILY ARID-like 49 96 IPR036431 GO:0003677
Aev08g0161 315 Coils Coil 272 292 - -
Aev08g0161 315 MobiDBLite consensus disorder prediction 195 216 - -
Aev08g0161 315 CDD HMGB-UBF_HMG-box 216 280 - -
Aev08g0161 315 SMART hmgende2 215 284 IPR009071 -
Aev08g0161 315 Gene3D - 27 98 IPR036431 GO:0003677
Aev08g0161 315 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 49 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0161 Aev-Chr8 918072 919982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0161 28 287 ARID Transcription Factor Family AT1G76110 59.023 3.82e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aev08g0161 HMG_box 1.3e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0161 - - adu:107460270 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0161 08 918072 919982 Aev08g0161 08 918072 919982 ECH