Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0065 ATGGCTAAACCGAAGGCTCCAAGGCGAACCCTAGAGTCATACACAGTCAAACACATTAACAAAACTATCAGAGCGGGGGACTGCGTGCTCATGCGGCCGTCGGAGCCGTCGAAACCGTCGTACGTGGCTAGGATCGAGCGGATCGAAGCTGACTCGCGAGGCGCGAACGTGAAGGTTAACGTGCGCTGGTACTACCGACCGGAGGAGTCAATCGGCGGCCGCCGCCAGTTCCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGCGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACAAAGCTTGACGCTGTTGGAAACGACGATTTCTTCTGTCGTTTCGAGTACAATTCCTCCACCGGCGCCTTCAACCCTGACAGAGTCGCCGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAAGGTTGCAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGCTGCTCTGCTGAAGCACTTTACCATTTGAATTGTCTTGCAGATGCCTTGGCCTTTGAGATGGTTGATATGTTCATCTATTTGTAG 642 0.5156 MAKPKAPRRTLESYTVKHINKTIRAGDCVLMRPSEPSKPSYVARIERIEADSRGANVKVNVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEALYHLNCLADALAFEMVDMFIYL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0065 213 Pfam PHD-finger 141 189 IPR019787 -
Aev08g0065 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 199 IPR013083 -
Aev08g0065 213 PANTHER OS08G0421900 PROTEIN 1 194 - -
Aev08g0065 213 SMART BAH_4 21 137 IPR001025 GO:0003682
Aev08g0065 213 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Aev08g0065 213 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Aev08g0065 213 Gene3D - 2 135 IPR043151 -
Aev08g0065 213 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 194 IPR045205 GO:0006325|GO:0035064
Aev08g0065 213 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Aev08g0065 213 Pfam BAH domain 22 136 IPR001025 GO:0003682
Aev08g0065 213 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Aev08g0065 213 SMART PHD_3 141 188 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0065 Aev-Chr8 372145 375196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0065 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 7.23e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aev08g0065 BAH 1.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0065 - - gmx:100787968 395.201