Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0055 ATGGAAATTGCCAAAGCGTTCAAACAAAGCTCGAGAGAGTTCTTTTTCCAGCAAGCACTTGGCGACGAGATTTTCTGCGTGAACGCCAACAACGTGGTGGTTGGTGGTGACGATTTCTCCGTCGACGACCTCCTCGACTTATCCAACGGCGATTTACAACACGCTTCCCTTCACTACGAACACCTCCAACAACAATACAGCGAAGAAAAAGACAGCTCATCCTTTTCTTCGCAGTCACAAGAAGATAGCAACTCATATTCCGCCGGAGTTTCCATTTTTTCCGACGAATTAGCCGTTCCGAACGATGATTTGGCGGAGTTAGAGTGGGTTTCTCACTTTGTGGACGATTCTCTTCCAGAGCTCTCTCTTCTGTACCCAGTAAGGCCTGACCAGCCCAAAACCCGGCCCGAACCGAAGCCCAGAGCGTCCTCGGTTCAGAGAACTCCTCGTTTTCCCTCCGTGACGAAAGTCCTCACCAAGGCGAGAACCGAAAAGAACAGAAAACCCAACGCTCGCGCGTGTTTATTTATAACGCCGTTGCTCTCGCGTCCGTCCTCGCCGTCGTCGTGTTCCTCCTCCGTCGTCTCGTCAACGGCCCAGCAGCCGCCGGCGAAGAGACAGAAGAAACGAGCCGATGCCCAAGAAGAGGGTGGGGCCCAGGCCCAGGCCCAGCTGCAGAGACGGTGCAGCCATTGCCAGGTGCAGAAGACGCCTCAGTGGAGGACGGGCCCACTAGGCCCAAAGACTCTCTGCAACGCGTGCGGGGTTCGGTTCAAGTCGGGTCGGCTTTTTGACGAGTACAGACCGGCGTGCAGCCCAACCTTCTCGAGCGAAATTCACTCCAACAGCCACCGTAAGGTGTTGGAGATGAGGAAGAGGAAGGGAATGGTTGGACCGGATACCGGTTCGGTTCAGTCTCATTTGGTTCCTACTTGCTGA 939 0.5463 MEIAKAFKQSSREFFFQQALGDEIFCVNANNVVVGGDDFSVDDLLDLSNGDLQHASLHYEHLQQQYSEEKDSSSFSSQSQEDSNSYSAGVSIFSDELAVPNDDLAELEWVSHFVDDSLPELSLLYPVRPDQPKTRPEPKPRASSVQRTPRFPSVTKVLTKARTEKNRKPNARACLFITPLLSRPSSPSSCSSSVVSSTAQQPPAKRQKKRADAQEEGGAQAQAQLQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFDEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPDTGSVQSHLVPTC* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0055 312 PIRSF Txn_fac_GATA_plant 10 310 IPR016679 GO:0003677|GO:0005634|GO:0045893
Aev08g0055 312 Pfam GATA zinc finger 229 262 IPR000679 GO:0006355|GO:0043565
Aev08g0055 312 Gene3D - 219 295 IPR013088 GO:0006355|GO:0008270
Aev08g0055 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 285 - -
Aev08g0055 312 MobiDBLite consensus disorder prediction 126 154 - -
Aev08g0055 312 MobiDBLite consensus disorder prediction 182 222 - -
Aev08g0055 312 CDD ZnF_GATA 228 285 IPR000679 GO:0006355|GO:0043565
Aev08g0055 312 PANTHER GATA TRANSCRIPTION FACTOR 3 312 - -
Aev08g0055 312 ProSitePatterns GATA-type zinc finger domain. 229 254 IPR000679 GO:0006355|GO:0043565
Aev08g0055 312 ProSiteProfiles GATA-type zinc finger domain profile. 223 259 IPR000679 GO:0006355|GO:0043565
Aev08g0055 312 SMART GATA_3 223 277 IPR000679 GO:0006355|GO:0043565
Aev08g0055 312 MobiDBLite consensus disorder prediction 182 204 - -
Aev08g0055 312 PANTHER GATA TRANSCRIPTION FACTOR 3 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0055 Aev-Chr8 296661 297697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0055 38 294 C2C2-Gata Transcription Factor Family AT4G36240 45.627 3.40e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aev08g0055 GATA 3.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0055 - - gmx:100780311 313.923