Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0053 ATGGATGCCGAAGACGAGGAAGCTCTAACTGCATCTTCTCCACCCCCTCCTGCTCCTTCTCCGCCACTCCAACAGCACCTGATTCACGATACGGAGGTGGTGGAAGAGGAAGGCACTGCTGTTGCCCAAGTGAAAGAAGAAGAACAGGAAGAAACGGTTGTGTTTCCGCCCGATATGGTCGAAGAAGCAACGGAGGAGACGGTTGTGGCGGTTCCGGAGGAGACACAGATTGTCGATTTGGCGAATGAAGGAGACGGGGGAATGCAAGTGATGATGGATGATGATAGAGTTGGTGATGAGGTAGTTGAGAAGGGGAATGGTTCTGGCCACGAAGATGATGGGATTACGGATGGAACTGAAGTAGGTAACGTGGCGAAGGTGGAAGAGGAGGGAACCCGTTTGGAAATCGTGGATGGTGAGGATAAGGTGGTGGAGGTGGCAGAGCAGATGGAGGAGGTAGCAAATGAAGCTGGGTTCACAGAAGAGAGAGAAGAAAAAGAGCATGAACATGAAAAGGATGAAGAAGGAGAAGAAGCTGATGTTGGTTGTGGTATGGCAAATGGAGCTGCTTTGATGGAAGAACACCAGCACGAACAAGCACAAGAACATGATCAAGAGGAAGCTGATGTTGGTGGTGGTGGGATAGGAAATGAAGCTGCTCTGATAGAAGAGCACGAAGAAGGACATGAACAAGAAGAAGAGCAACACCAAGAGGAAGAAGTAGAAGCAGAGGACAAACAAGTCGGTGCTGGTTTAGGTATTTCAAATGAAGCTGATTTGATGGAAGAAGATGAAGAAGAAGCAGAAGAACAAGCTGATGATGATAATGGTATAACAAATGAAGCTGCTTTGATGGAAGAGCATGAAGAAGGACAAGAGGATGAAGACGAACAAGCTGATTCTGGTATTGGTATAGCAAATGAAGCTGCTTTGATGGAAGAGCATGAAGAAGAACAAGAAGAAGAAGAAGACGAGCAAGAACAAGTTGATGGTGATAATGCTATAGCAAATGAAGTTGCTTTGATGGAAGAACATGAAGAAGGTCAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGCTGATGGTGGTGATGTGGGTATGGGAGAAGAAACAGAGGAAGCTGCGGATCAGAGTAGAAGTGTGAGTGGCGGGAAGAGGAAGCGTGGGAGTGGTAAGAATTCCAAGTCAACAGGGAGAGTCACACCAAAGAAGAAGATGGAAGAAGACGTTTGTTTCATTTGCTTTGACGGGGGTGACCTTGTGCTCTGTGACCGAAGGGGATGCCCAAAGGCCTACCATCCTAAATGCGTAAACCATGATGAGGCCTTTTTCCGAACCAAGGGAAAATGGAATTGCGGTTGGCATCTCTGCAGCAACTGTGAGAAGAACGCTTACTATATGTGTTTTACATGTACATTCTCCTTGTGCAAGGGATGCATCAAAGATAGTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGTCATGCATGAGAACTGTAATGTTGATTGAACAGAATAATCAGGGAAACATGGGACAAGTTGATTTTGATGACAGAAGCACCTGGGAGTATCTCTTCAAAGACTACTACGTAGATCTAAAAGAAAAGCTAAATCTGACATTTGATGAACTCACACAAGCTAAAAACCCTTGTAAGGGATCTGATGTGCTTCCTTCCAGAGAGGAATCAGCAGGTGAACCTTTTGATGCCAATAATGATAGAGCATCAGATTCAGATAGCTCGTATGAAAATGTAGATTTGAGTCGTTCAAAAAGAAGAAAAGGCAAGAAAAAGACAAAGTCCCGTCCCAAAGGAAGGGCATATAGTTCGGTGCGTGGTGCTGATGGGCCATCTGCAGATGAAAGCTTTGAGTGGGCTTCAAAAGAGCTCTTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTGTCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATAAAAAGAAATAAGCTTCGAGATCCCCGCAGAAAAAGCCAAATCATTTGTGATGCCAGGCTTCAAAGTTTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAAGATTCTCAGGCAGAAGATCTGCAGGGGAGTGTTGTTGATACTGAAGTTAGTCATTTGGAAGGTGATGGCAACTCCGATTCATATCTGAAAGGTGGCAAAGATAAAAAACGTAAAACACGTAAGAAGGGTGATGAGAGAGGACTTCAATCTAATGTGGATGATTATGCTGCCATTGATAATCATAATGTTAATTTAATTTATCTTCGGCGTAATTTGGTGGAAGAGCTACTTGAAGATACAGAGAAGTTTCATGATAGAGTTGCTGGTTCTTTTGTGAGAATAAGGATTTCAGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATCTCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATCATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGACTCCGCCAAAGTATTAAGTGTGGGCTCATAAATCGGCTGACTGTGGGTGACATTCAGGAAAAAGCAATGGCACTTCAGGCAGTTAGAGTAAATGATGTGAGTTGTTTCTCTATTCCTTTGCCACTTAATGGGATATTGGAAGAAATTTCGGAAATTCATGTGGATCCAAAGATGGATCCAAATTATGAGTCTGAAGAAGATGAAGATGAAATGGATGAAAAAAGACAAGAAAACTACTTGAGACCTAGAGGATCTGCTGCCTTTGGACGGAGGGGAAGAGAAATAATTTCTCCTCGGAGTGTTTCTATTTCAAGTGATTCTTGGAGTGGAACGAGAAATTATTCTAATGTGAATCGGGAACTCAGCAGAAACTTGTCTAATAAGGGATTCTCAATCAAAGGGGATGATGTTTCTACTGCTAGTGAGGTATTAAGTGATGCTCAACTACTTCAGGGAAGAGATAAAGGATCACAGCCTAATAGCTTAGAGAGGCAAAAACTAACTTCAAGCTTTGAAAGTGGTGCTAAAAGTAACCAGCCTATAGTAACACCTGAAACTTTCTCTATGCATGTGTTAGAAGCTTCTGCAGCACCATCTTCTGCCGGAGTAGCTCCCCCTGCTATTAAAATTAATGAGACTGAAAAGATATGGCATTATCAGGATCCGTCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGCTACGCAAATGGAGTAACACAGGATACTTCCCTGCAGATTTGAGGATTTGGAAAGCCACCGAAAAGCAAGATCAGTCTATGCTCTTAACAGATGCCTTAGCAGGAAAATTTTCTAAAGAATCTTCAATGGTGGATTCAACTCTTCCTAAGACTCAGTTGGTGCATGATCTGCACTACTCATCCTCTTACTCTGGGAAGTCTCCTTTGGTTGCACAAGCTACAGAAGTTCAAGCTGGTGGAAGACCAACATTTGATCAAAATCGTGCATCACATAATAGTCTGGGTTCTCCAGTTCAAAATGTGGGTGGAGGTTGGAGATCCAAAGATAATATGACTCCTTTAGCAAGTAGACCTTCTGCATTGGCAGTTGAGGTCCCAAAGAATCCAGTAAATGGTTGGGGTTCTGATGCTGGTGTTAGAAATGAACCAACAAATCTTCCTTCGCCTACTCCCCAGACTGCTTCAGGTGGGACTAAGATGCAGGCTTTTGAAAATGAATGGTCTCCAACTCCTGGGGGTCCTGGAAGTGGTTCAATTCAACCTGGTATGATGTCAGCCTCTAAATCCGACAAGGGTATGATATTGAACTCTGCAGATACTATGCAAGTACATCCTCATGCAACAGCTGTGGCGCCTATTGTGGCTTCAGGTGTTGACATTCAAACTGCAGGAGCAAATCTGCAAAACCAGGTTGTGGGTAGCCATAACTCTCGTTCTGAAGCTCATCAAGGATGGGGTTCTGGTACGGTTTCAAAGCCAGAATCACAGGCCTGGGGAGGTACACAGTCCCAAACTCAGAGGATAGAACCCAATAATCCTGCTACTATGCCTGCACAACCAGCTTCCCATGGCCTCTGGGTTGATGCTTCATCCGTCCAGAACTCTGCCTCATTTAGCACTGTAAATCCAACTGGCAATTTTCCCACTGCAGGCTTTCCAGGCATGGCTACTTCCGAGCCTTGGAGACCGCCAACCTCAAATAGTCAGCCAACTGTAGCAGCAGCTGCAGTTCCACCCAATGTACCGTGGAGCATGGGCGTGATGGAAAATCAAAATGCGGCTTGGGGCATGCCAGGAACTCAGAACATCAACTGGAGTGGGTCTCTACCTGCCAATATGAACACAAACTGGATGCATGGGCAGATTCAAGCACCCGGAAACGCAACCCCTGGATGGGCTGCTCCTAGCCAGGCACCACCTCCAGCAAATGCGGTTGGCTGGAGTGCACCTGGTCAAGGACGTCCGTATGTAAATGCAAATGCAGGTTGGGTTGCGCCTGGTCAAGGTCCAGCACCTGGAAGTGCTAATCCTGGTCGGGCTGCGTCAACCGGTAATCCGGGCACATGGGGAGGCGAGCAAGGTCGTAACGGAGACAGGTTCCCCAGTCAAGGGGATCGAGGTACACATGGTGGTGATTCTGGTTATGGAGGTAAACCTTGGAATAGGCAATCATCATTTAACAGCGGAGGTCGGGGAGGTTCTTCCAGGCCTCCTCCCGGAGGACAAAGAGGAGTCTGCAAGTACCATGAGAGTGGACATTGCAAGAAGGGGGCTTCCTGTGATTTTATGCACACTTAA 4884 0.4494 MDAEDEEALTASSPPPPAPSPPLQQHLIHDTEVVEEEGTAVAQVKEEEQEETVVFPPDMVEEATEETVVAVPEETQIVDLANEGDGGMQVMMDDDRVGDEVVEKGNGSGHEDDGITDGTEVGNVAKVEEEGTRLEIVDGEDKVVEVAEQMEEVANEAGFTEEREEKEHEHEKDEEGEEADVGCGMANGAALMEEHQHEQAQEHDQEEADVGGGGIGNEAALIEEHEEGHEQEEEQHQEEEVEAEDKQVGAGLGISNEADLMEEDEEEAEEQADDDNGITNEAALMEEHEEGQEDEDEQADSGIGIANEAALMEEHEEEQEEEEDEQEQVDGDNAIANEVALMEEHEEGQEDEEEEEEEEEAADGGDVGMGEETEEAADQSRSVSGGKRKRGSGKNSKSTGRVTPKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPKCVNHDEAFFRTKGKWNCGWHLCSNCEKNAYYMCFTCTFSLCKGCIKDSVILCVRGNKGFCESCMRTVMLIEQNNQGNMGQVDFDDRSTWEYLFKDYYVDLKEKLNLTFDELTQAKNPCKGSDVLPSREESAGEPFDANNDRASDSDSSYENVDLSRSKRRKGKKKTKSRPKGRAYSSVRGADGPSADESFEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQSLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEGDGNSDSYLKGGKDKKRKTRKKGDERGLQSNVDDYAAIDNHNVNLIYLRRNLVEELLEDTEKFHDRVAGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDLLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQEKAMALQAVRVNDVSCFSIPLPLNGILEEISEIHVDPKMDPNYESEEDEDEMDEKRQENYLRPRGSAAFGRRGREIISPRSVSISSDSWSGTRNYSNVNRELSRNLSNKGFSIKGDDVSTASEVLSDAQLLQGRDKGSQPNSLERQKLTSSFESGAKSNQPIVTPETFSMHVLEASAAPSSAGVAPPAIKINETEKIWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWKATEKQDQSMLLTDALAGKFSKESSMVDSTLPKTQLVHDLHYSSSYSGKSPLVAQATEVQAGGRPTFDQNRASHNSLGSPVQNVGGGWRSKDNMTPLASRPSALAVEVPKNPVNGWGSDAGVRNEPTNLPSPTPQTASGGTKMQAFENEWSPTPGGPGSGSIQPGMMSASKSDKGMILNSADTMQVHPHATAVAPIVASGVDIQTAGANLQNQVVGSHNSRSEAHQGWGSGTVSKPESQAWGGTQSQTQRIEPNNPATMPAQPASHGLWVDASSVQNSASFSTVNPTGNFPTAGFPGMATSEPWRPPTSNSQPTVAAAAVPPNVPWSMGVMENQNAAWGMPGTQNINWSGSLPANMNTNWMHGQIQAPGNATPGWAAPSQAPPPANAVGWSAPGQGRPYVNANAGWVAPGQGPAPGSANPGRAASTGNPGTWGGEQGRNGDRFPSQGDRGTHGGDSGYGGKPWNRQSSFNSGGRGGSSRPPPGGQRGVCKYHESGHCKKGASCDFMHT* 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0053 1627 ProSiteProfiles Plus3 domain profile. 765 898 IPR004343 GO:0003677
Aev08g0053 1627 PANTHER UNCHARACTERIZED 226 901 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 100 121 - -
Aev08g0053 1627 ProSiteProfiles GYF domain profile. 1082 1136 IPR003169 GO:0005515
Aev08g0053 1627 SUPERFAMILY FYVE/PHD zinc finger 409 462 IPR011011 -
Aev08g0053 1627 ProSiteProfiles Zinc finger C3H1-type profile. 1602 1627 IPR000571 GO:0046872
Aev08g0053 1627 SMART rtf1 765 875 IPR004343 GO:0003677
Aev08g0053 1627 SUPERFAMILY Plus3-like 766 895 IPR036128 GO:0003677
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1336 1383 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 924 952 - -
Aev08g0053 1627 SUPERFAMILY SWIB/MDM2 domain 626 705 IPR036885 -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1580 1594 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 313 331 - -
Aev08g0053 1627 ProSitePatterns Zinc finger PHD-type signature. 413 473 IPR019786 -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 258 276 - -
Aev08g0053 1627 SMART swib_2 638 709 IPR019835 -
Aev08g0053 1627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 504 IPR013083 -
Aev08g0053 1627 SMART gyf_5 1083 1138 IPR003169 GO:0005515
Aev08g0053 1627 Coils Coil 222 246 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1488 1607 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1227 1260 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 156 179 - -
Aev08g0053 1627 Gene3D - 767 895 IPR036128 GO:0003677
Aev08g0053 1627 ProSiteProfiles Zinc finger PHD-type profile. 410 476 IPR019787 -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 723 754 - -
Aev08g0053 1627 PANTHER UNCHARACTERIZED 914 1627 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 287 301 - -
Aev08g0053 1627 Coils Coil 305 332 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1 28 - -
Aev08g0053 1627 Coils Coil 339 362 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1183 1205 - -
Aev08g0053 1627 Pfam GYF domain 1085 1125 IPR003169 GO:0005515
Aev08g0053 1627 MobiDBLite consensus disorder prediction 556 623 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 344 373 - -
Aev08g0053 1627 ProSiteProfiles SWIB/MDM2 domain profile. 623 706 IPR003121 -
Aev08g0053 1627 SMART PHD_3 412 458 IPR001965 -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 595 609 - -
Aev08g0053 1627 Coils Coil 254 274 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1017 1048 - -
Aev08g0053 1627 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 226 901 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1243 1260 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 195 209 - -
Aev08g0053 1627 CDD PHD5_NSD 412 457 - -
Aev08g0053 1627 SUPERFAMILY GYF domain 1073 1135 IPR035445 -
Aev08g0053 1627 Gene3D - 1084 1142 IPR035445 -
Aev08g0053 1627 Gene3D SWIB/MDM2 domain 618 714 IPR036885 -
Aev08g0053 1627 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 914 1627 - -
Aev08g0053 1627 Pfam Plus-3 domain 770 873 IPR004343 GO:0003677
Aev08g0053 1627 CDD GYF 1082 1137 IPR003169 GO:0005515
Aev08g0053 1627 Pfam SWIB/MDM2 domain 631 704 IPR003121 -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 1336 1380 - -
Aev08g0053 1627 MobiDBLite consensus disorder prediction 153 403 - -
Aev08g0053 1627 CDD SWIB-MDM2_like 629 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0053 Aev-Chr8 281456 289793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0053 410 501 PHD Transcription Factor Family AT4G14920 37.113 9.79e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aev08g0053 Plus-3 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0053 - - aip:107608758 1955.64