Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0047 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTGAGAGGGCTTATGGAACCGTCCAGTTTTCTTATCGTCACGAAACACGTAACATAAAACCAACTTCATTTGTCTGTTTGTTTTTTCTTTTTCGTTTGTCCGGTACAAGTGGTGGCGGCATGGAGGTCGATGAGTCCCAGCCGGCAGAGGAAGCAGCAGTGTGTGAAGCTCAACCTCAGTCTCAGTCTCAGTCTCAACCTTTGTCTCAACAAACTCCCGAGCAACTGGTGGCGAGGGCCATAGCCCCTGTGAAGAAGGAATTCCTTCGCCCTCCTCCTGCTCGCCCTTCCGCCACAAACGACGACGTTTCCGCCGCCAACGATCCTCAATCAGGTTCCGCAGTGCTCAAGGAGAAGAAGTCCAAGCGCCAACTCAAACGCGAACGCCGTCAGGAACAAAAGTCTGCGCGAAACCTCTGCCCCGAAATTGCAAAGACCGGTGATGTTAATTCCTGTCGTTATAAAGACAAATGCCGCTTCAGCCACGATATTGAAGCCTTCCAGGTCCAGAAACCAGCTGAACTAGAGGGAAAGTGTCCTTTTGTTGATTCTGGAGGGCCCTGCCCTTATGGGTTAGCCTGTAGATTTTCAAGCACACATGAAGATGATGTGCCTTCTTCTGGCATTGGCAATCTCAAAGGTTTTAAGAATAGTTCTGAGGTAAATGGAATTAGCAAAGATGTTCAGAAGCTTTTGTGGAAAAATAAGATGAGGTTCTCCAAGGCAGATGCCAATCTCAAGAGTCTTGGCCTTTTGAGTCTCTCTAAGTCAAAAATGAAGGACTTGGAAAATAAAGATGGTCAAAACACTTGTTCAAATAAATGTGATCCTTCTGATGACAAAGGCTCTTGTGGAGTAACCACTGACTCAAGTTCTAAGTTAGAAGAAGCTGTAAAAGATGATGTTGACAGAAAATTCGAGTCCGATAAACTTTGTCCACAGAAGAGAAGAAAAACTGCAGAAAGTTATGAACCTGATGAGACAGAAAACGAAGGTGTGAGTGTTACTGAACAATTTGTTGAAAGAAGCAACAGCATAAATGCTGAACCAGATGCAGGAAGTGATGCTGCTGAAACTGGTGTGAGTGTTGCTGAGCAAATTGTTGAAAGAAGCAGCATAAAAGCTAAACCAGAAGAAGGAAGGGATGCTATAACCACAGAAACTGACCTAAGTATGAAGTTGCAGTCACGCGAAAAGAAGCTTATTGATTTTAGGGAGAAATTGTATCTTGCACCCTTGACCACTGTTGGAAATCTGCCATTCAGGAGGGTTTGCAAAGTATTGGGAGCTGATGTAACATGTGGTGAGATGGCAATGTGCACAAATCTTTTGAAGGGTCAAGCTTCAGAATGGGCATTGCTTAGACGTCATTCAGCTGAAGATTTATTTGGTGTACAAATCTGCGGTGCATATCCAGATACTGTGGCACGAGCAGTTGAACTAATAGAGCAAGAATGTTCGATTGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTCAATAAGGGTGCTGGGTCAGCACTTCTGACAAAGCCAATGCGAATGAAAAACATTGTACAAGTAGCTTCAAGCACGGTGGATATACCAATAACTGTGAAGGTGCGGACAGCTTATTATGAAGGAAAGAACCGCATTGATTCTCTGATTGCTGACATGGGCACTTGGGGAGCTAGTGCAGTAACAATTCATGGTAGGTCACGACAACAACGCTATAGCAAGCTTGCTGATTGGGAATATGTATACCAGTGTGTTAGTAAGGCCCCTAAGGCTCTGCATGTTGTGGGGAATGGAGATGTTTTTTCATTTGTTGACTGGAATAACCACAGAACTGCATGCCCCGAACTTGCTACCTGCATGATTGCCCGCGGTGCTCTAATCAAGCCTTGGATATTTACGGAGATCAAGGAACAGAGACATTGGGATATCAGTTCTGGCGAGCGATTAAATATTCTCAAAGATTTTGTGCATTTTGGCCTTCAACACTGGGGTTCTGACACAAAAGGAGTTGAGACAACCAGGCGATTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTATGTACCTGTTGGTCTTTTGGATGTGATTCCACAACGAATAAACTGGCGTCCACCATCTTACTATGGGCGTGATGAGCTGGAGACACTGATGGCCTCAGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTACTAGGCAAGGTTCCAGATGGCTTTACATTTGCTCCAAAGCATAAATCAAATGCTTACGACAGAGCCGAAAACGGTTGA 2322 0.447 MAEWSKAPDSSSGPRERAYGTVQFSYRHETRNIKPTSFVCLFFLFRLSGTSGGGMEVDESQPAEEAAVCEAQPQSQSQSQPLSQQTPEQLVARAIAPVKKEFLRPPPARPSATNDDVSAANDPQSGSAVLKEKKSKRQLKRERRQEQKSARNLCPEIAKTGDVNSCRYKDKCRFSHDIEAFQVQKPAELEGKCPFVDSGGPCPYGLACRFSSTHEDDVPSSGIGNLKGFKNSSEVNGISKDVQKLLWKNKMRFSKADANLKSLGLLSLSKSKMKDLENKDGQNTCSNKCDPSDDKGSCGVTTDSSSKLEEAVKDDVDRKFESDKLCPQKRRKTAESYEPDETENEGVSVTEQFVERSNSINAEPDAGSDAAETGVSVAEQIVERSSIKAKPEEGRDAITTETDLSMKLQSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLKGQASEWALLRRHSAEDLFGVQICGAYPDTVARAVELIEQECSIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVQVASSTVDIPITVKVRTAYYEGKNRIDSLIADMGTWGASAVTIHGRSRQQRYSKLADWEYVYQCVSKAPKALHVVGNGDVFSFVDWNNHRTACPELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYVPVGLLDVIPQRINWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0047 773 CDD DUS_like_FMN 421 656 IPR035587 -
Aev08g0047 773 Pfam Dihydrouridine synthase (Dus) 424 659 IPR035587 -
Aev08g0047 773 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 89 773 - -
Aev08g0047 773 MobiDBLite consensus disorder prediction 307 339 - -
Aev08g0047 773 MobiDBLite consensus disorder prediction 282 306 - -
Aev08g0047 773 MobiDBLite consensus disorder prediction 70 90 - -
Aev08g0047 773 SMART c3hfinal6 189 216 IPR000571 GO:0046872
Aev08g0047 773 SMART c3hfinal6 149 178 IPR000571 GO:0046872
Aev08g0047 773 MobiDBLite consensus disorder prediction 54 153 - -
Aev08g0047 773 Gene3D Aldolase class I 416 659 IPR013785 -
Aev08g0047 773 ProSiteProfiles Zinc finger C3H1-type profile. 148 179 IPR000571 GO:0046872
Aev08g0047 773 SUPERFAMILY FMN-linked oxidoreductases 421 734 - -
Aev08g0047 773 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 89 773 - -
Aev08g0047 773 ProSitePatterns Uncharacterized protein family UPF0034 signature. 505 523 IPR018517 GO:0008033|GO:0017150|GO:0050660
Aev08g0047 773 MobiDBLite consensus disorder prediction 277 348 - -
Aev08g0047 773 Gene3D - 143 222 - -
Aev08g0047 773 Pfam CCCH-type zinc finger 153 177 IPR041367 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev08g0047 Dus 9.8e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0047 K05544 - gmx:100783494 1071.23