Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0019 ATGGCGGTGGGTCAAGGTGTGGTTCCTCCACTCTCTCCTCTGTTACGGCGGAATGGGAGTGGGGTTCTGCTGCGTTATCATCCCCAACGCCTTCTCTCCGTCTCCGTCTCCGTCACCGCCACCGCCACCCACGATGCTGCCATCTCATCATCATCCAGTGCGGACTCTTCAAGCTTTGCAAGACTCAAAGCCCAGAAAGTCAAGGCTCTCATCCACAAGTCCAAGCAGCACAGAACAACCACTCCTCCTCATCATGACCATGACCATGACCATGACGACGATGATCATCAACCTCTTCCCGAGAGGAGCTCATCCCCTCCTCCTCCTCCTCCCCCTCCTCGTTCTCATTCCAAATCAAGAGGATGGGGGGATGGCGGGTCCTCTTTTCGTTCTCTCAAGTCTCAATCGCACAACTCTCTCAACCGACACCACAAATCTTCCGCTGACGCCAACTACTTCTTCAGCCTTAAGTCCTTCAAGGAACTAGGCTGCGCCGACTTTATCATTCGATCCCTCCAAAACCTCTCCTTCCTCCGCCCTTCACACATACAGGCCATGGCATTTGCACCTGTTCTTGGTGAAAAAACTTGTGTCATAGCTGATCAAAGCGGATCTGGAAAAACACTAGCGTATCTTGCACCAATAGTTCAGCGTCTTAGACAAGAAGAACTAGAAGGACGTAGTAAATCCTCTTCACAAGCTCCTAGAGTTGTGATACTTGCACCAACAGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCAATGTCAAGATCTGGGGTTCCGTTCAAATCTATGGTTGTCACCGGTGGCTTTCGACAAAGAACTCAACTTGAAAATTTACAGCAAGGTGTTGATGTCTTAATAGCTACACCTGGCCGTTTTCTGTACCTTATAAAAGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTCTTTAGTGATGAGGATTTTGAAGCGGCTCTTCAATGCTTGATTAATTCTTCACCTGTTGCCACACAATATTTATTTGTGACTGCAACTCTACCTAGAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCCGATTGTGAAATGATCATGGGACCCGGTATGCACCGAATAAGCCCTCGCCTTGAAGAGGTTATAGTAGACTGCAGTGGAGAAGATGGACAGGAAAAAACACCTGATACAGCATTTTTGAACAAAAAATCTGCTCTTCTGCAGCTTGCAGAGGAACGTCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACTTGCAGAAAAGTCGAAAATTCATTGAAGCGCTTTGATAGAAAGGAAATTCATATTCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGAAGAGTTTACACGTCCGCCATCAAAAGAAGTCTCTCAGTTTTTGGTTTGCACGGACCGAGCATCGAGAGGAATCGACTTTGCGGGAGTGGATCACGTGGTACTGTTTGACTTCCCACGGGATCCGAGCGAGTATGTACGGCGTGTTGGAAGAACAGCGAGAGGTGCCAAGGGAGTTGGGAAGGCATTTATATTGGTGGTAGGGAAGCAAGTATCCCTGGCTCGCAAAATCATGGAAAGAAATCAGAAGGGTCATCCACTACATGATGTACCTTCTGCTTATTAG 1683 0.4682 MAVGQGVVPPLSPLLRRNGSGVLLRYHPQRLLSVSVSVTATATHDAAISSSSSADSSSFARLKAQKVKALIHKSKQHRTTTPPHHDHDHDHDDDDHQPLPERSSSPPPPPPPPRSHSKSRGWGDGGSSFRSLKSQSHNSLNRHHKSSADANYFFSLKSFKELGCADFIIRSLQNLSFLRPSHIQAMAFAPVLGEKTCVIADQSGSGKTLAYLAPIVQRLRQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSRSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLYLIKEGFLQLTNLRCAVLDEVDILFSDEDFEAALQCLINSSPVATQYLFVTATLPRNVYSKLVEVFPDCEMIMGPGMHRISPRLEEVIVDCSGEDGQEKTPDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRKVENSLKRFDRKEIHIQVLPFHAAMTQESRLASMEEFTRPPSKEVSQFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAKGVGKAFILVVGKQVSLARKIMERNQKGHPLHDVPSAY* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0019 560 Pfam DEAD/DEAH box helicase 182 355 IPR011545 GO:0003676|GO:0005524
Aev08g0019 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 560 IPR001650 -
Aev08g0019 560 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 44 558 - -
Aev08g0019 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 533 IPR027417 -
Aev08g0019 560 MobiDBLite consensus disorder prediction 81 100 - -
Aev08g0019 560 MobiDBLite consensus disorder prediction 65 144 - -
Aev08g0019 560 MobiDBLite consensus disorder prediction 101 116 - -
Aev08g0019 560 MobiDBLite consensus disorder prediction 121 136 - -
Aev08g0019 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Aev08g0019 560 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 44 558 - -
Aev08g0019 560 CDD DEADc 168 355 - -
Aev08g0019 560 Pfam Helicase conserved C-terminal domain 405 521 IPR001650 -
Aev08g0019 560 Gene3D - 381 554 IPR027417 -
Aev08g0019 560 SMART ultradead3 176 384 IPR014001 -
Aev08g0019 560 Gene3D - 127 369 IPR027417 -
Aev08g0019 560 CDD SF2_C_DEAD 381 532 - -
Aev08g0019 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 369 IPR014001 -
Aev08g0019 560 MobiDBLite consensus disorder prediction 66 80 - -
Aev08g0019 560 SMART helicmild6 432 522 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0019 Aev-Chr8 109970 113175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0019 156 530 Eukaryotic Initiation Factors Gene Family AT3G19760 27.128 8.17e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0019 K13179 - gmx:100784377 724.931