Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g2345 ATGTACATGATCGGTGGAAACCACCACCATCACCATCACCACCACCATAACCTTCCCAATTTCAACGAAAACGACGACGAAAATTCGCCGCGAGAGGGTAACCGGCGACCACAACAACATTGCCCGATGATGACAAACAGTATTGCCGGCGGCGGTGACCGATCACCGTTCAATCCGGTCATCATGCTCCGAGGTAACGGTAGCAGCGGGGAAGGATCCTCCGAGGGAAGCAGTCGTCGTCGTGGCTTCGACCTTTTCTACGACGACGGTGCCAATGTTGGCCTCCGCCCTTTACCTCCGAGCATGTCGGAGTTTCTCCTCGGAACAGGGTTCGACAGGGTATTGGAACAGCTCTCACAAATCGAGAGACACGACATCGAAAACAACCATCACCAGCACCACCGGCAGAACCCTCCTCCGGCGTCAAAATCCACCGTGGAAACTTTACCGATGGTGGAGATCGGAGAGAATCATTTAGCGACGGAACCGCACTGTGCAGTTTGTAAGGAACCCTTTGAGCTCGGAACAAGGGTGAAAGAAATGCCTTGCAAACATATATACCATTCAGAGTGCATCTTGCCATGGCTCGCTATGAGAAATTCTTGCCCTGTTTGCCGCCATGAATTGCCACCGGATGAAGATCACGTGCAGAGCATGAACGCACGTGCTTCGGCAGAGGAGAATGTTGGGTTGACGATTTGGCGGTTACCTGGTGGCGGTTATGCGGTTGGGAGATTCTCTGGCGGAAGAACAGAGAGGGATCAGATTCTTCAGGTTCCTTCTGTGTACACTGAAATGGATGGTGGTGGGTTCGGTAATAATAGTAATAATGATGATGTTGGTGAAGAAGGAACTAGGAGAGTTTCTTGGACTGTGGAATCTTCTAGAGAGAGGAGGACTAGTGTTGGTGGTGGGTTGAGGAGGTTGGTTAATAATTTGTTTGGTTGCTTCACCAGTGGTGGTGGTCGTGGTGGTGGTATTTTTCGGCATCGCCGGAGTAATAGTTCTTCCACTAGGGAGAGTATTAGGCCATTGAGGGGTGCTAGTGTTGTTCGATCGAGTTTGAATTCAGATTACTCATCCTCTGCTCGTTCTCGCAATAGGACTTGGTCTATGGATGTACAGAATGGGATGAGGCATTGGTGA 1146 0.5052 MYMIGGNHHHHHHHHHNLPNFNENDDENSPREGNRRPQQHCPMMTNSIAGGGDRSPFNPVIMLRGNGSSGEGSSEGSSRRRGFDLFYDDGANVGLRPLPPSMSEFLLGTGFDRVLEQLSQIERHDIENNHHQHHRQNPPPASKSTVETLPMVEIGENHLATEPHCAVCKEPFELGTRVKEMPCKHIYHSECILPWLAMRNSCPVCRHELPPDEDHVQSMNARASAEENVGLTIWRLPGGGYAVGRFSGGRTERDQILQVPSVYTEMDGGGFGNNSNNDDVGEEGTRRVSWTVESSRERRTSVGGGLRRLVNNLFGCFTSGGGRGGGIFRHRRSNSSSTRESIRPLRGASVVRSSLNSDYSSSARSRNRTWSMDVQNGMRHW* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g2345 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 212 IPR013083 -
Aev07g2345 381 CDD RING-H2_RNF181 165 209 - -
Aev07g2345 381 ProSiteProfiles Zinc finger RING-type profile. 165 206 IPR001841 -
Aev07g2345 381 Pfam Protein of unknown function (DUF1117) 229 343 IPR010543 -
Aev07g2345 381 SUPERFAMILY RING/U-box 145 212 - -
Aev07g2345 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 314 - -
Aev07g2345 381 MobiDBLite consensus disorder prediction 325 348 - -
Aev07g2345 381 MobiDBLite consensus disorder prediction 267 286 - -
Aev07g2345 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 1 314 - -
Aev07g2345 381 MobiDBLite consensus disorder prediction 18 34 - -
Aev07g2345 381 SMART ring_2 165 205 IPR001841 -
Aev07g2345 381 MobiDBLite consensus disorder prediction 1 17 - -
Aev07g2345 381 MobiDBLite consensus disorder prediction 1 81 - -
Aev07g2345 381 Pfam Ring finger domain 164 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g2345 Aev-Chr7 24231915 24233060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev07g2345 92 213 C3H Transcription Factor Family AT5G01980 40.984 2.57e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev07g2345 - K11982 gmx:100807324 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev07g2345 07 24231915 24233060 Aev07g2345 07 24231915 24233060 ECH