Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g2209 ATGGCCAGGTCAAAAGTGAAGCACACATACATAACCAATGATGCTTTGAGGAAGAGAACATTGAAGAAAAGGATAAATGGGGTTATGAAGAAGATCAATGAACTAACCACCCTTTGTGGGGTGGAAGGTTGTGTCATTGTGTACGATTCCAAAAGTGAAGATTCTCAGCCTGAGATTTTTCCTCGATCACACACCGAGGTCCAAAAGGTGGTTAGCAAATTCTTCAAAATGTCCAAATACAACCGAACCAACAAGATGCAAGACCAACAATCGTACTTGAAATCGAGGATTCGGAAGGCGAAGGAGCAATTGATGAAGATAAGGAGGGCTAATCGGGAGAAGGAGATGACAATTCGTGTGGACGAGTTAGTTGAGACAATGAATGTTCCGGAGAATTTGAGCTTGGTTGATCTGAATGACATAGCATATGTTGCTAATCAAAAGATAAGGGACATCGATATGCGATTGAATGAGATGAAGAAGAAGGAAGAGGAGGAAATGAGACAGGTGATGGAGAATTTCTCTGTGTCATCATCATATGTGCCTGCCCCGGTGGATGAAGAGGTCTATGATAATGGTGGTTTGGAGATGATTTTGGATGCTAATGTAAAGAAGGATGAGTGA 624 0.4183 MARSKVKHTYITNDALRKRTLKKRINGVMKKINELTTLCGVEGCVIVYDSKSEDSQPEIFPRSHTEVQKVVSKFFKMSKYNRTNKMQDQQSYLKSRIRKAKEQLMKIRRANREKEMTIRVDELVETMNVPENLSLVDLNDIAYVANQKIRDIDMRLNEMKKKEEEEMRQVMENFSVSSSYVPAPVDEEVYDNGGLEMILDANVKKDE* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g2209 207 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Aev07g2209 207 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev07g2209 207 SUPERFAMILY SRF-like 3 97 IPR036879 GO:0003677|GO:0046983
Aev07g2209 207 Gene3D - 14 99 IPR036879 GO:0003677|GO:0046983
Aev07g2209 207 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 171 - -
Aev07g2209 207 Coils Coil 149 173 - -
Aev07g2209 207 SMART madsneu2 1 58 IPR002100 GO:0003677|GO:0046983
Aev07g2209 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Aev07g2209 207 Coils Coil 97 117 - -
Aev07g2209 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev07g2209 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev07g2209 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev07g2209 207 PANTHER MADS BOX PROTEIN 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g2209 Aev-Chr7 23099599 23100222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev07g2209 1 184 Type I MADS-box Gene Family AT5G48670 39.459 1.76e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev07g2209 SRF-TF 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev07g2209 - - ahf:112766956 154.066