LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev07g1973	ATGGTGAGGCAGAAGATTAAGATAAAGAAGATCGATAACGTGACAGCGAGGCAAGTGACGTTCTCGAAGAGGAGGAGAGGGATCTTCAAGAAAGCTCAGGAACTCTCTGTGTTGTGTGATGCTCAAGTTGCTCTCATTATTTTCTCTTCCACTGGAAGGCTCTTTGAGTATGCTAGCTCCAGCATGAAGGACATAATTACAAGGTATAAACAGCGCCTAAGTGAGATAAACGAATCGGACATACCTTGGCTGCAGCAAGAGAATAGCAATAACGATGAATTGCGTAAGGAAGTTGCTGACAAAACACAAGAACTAAGGCAGATGAAGGGAGAGGATTTGCAAGGTCTAAACTTAGATGACTTGGTGCAACTAGAGAAAACACTTGCAGCAGGACTGAAGCGCGTAAATGACACAAAGGAAAAACGGATTATTGATGACATTATAGCGCTTCAGAAAAAGGGGGTCGAATTAGAAGACGAAAACAAGCAGTTAAAACAAAAGATTGCTGTATTGTCAATGGGAAAAAGTCCTTTACCAGTGGACATAGATATTGCTGTGCAGGAAGTTGTCTCATCAGAGTCTATGAATAATGGTTGTAGCTGTATCACTGGCCCTTCTCTTGAGAGTGATTCCTCTGACACATCTCTTAAGTTAGGATTGCCTTTCCCTAATTGA	675	0.4193	MVRQKIKIKKIDNVTARQVTFSKRRRGIFKKAQELSVLCDAQVALIIFSSTGRLFEYASSSMKDIITRYKQRLSEINESDIPWLQQENSNNDELRKEVADKTQELRQMKGEDLQGLNLDDLVQLEKTLAAGLKRVNDTKEKRIIDDIIALQKKGVELEDENKQLKQKIAVLSMGKSPLPVDIDIAVQEVVSSESMNNGCSCITGPSLESDSSDTSLKLGLPFPN*	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev07g1973	224	Coils	Coil	84	111	-	-
	Aev07g1973	224	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Aev07g1973	224	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Aev07g1973	224	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Aev07g1973	224	MobiDBLite	consensus disorder prediction	204	224	-	-
	Aev07g1973	224	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Aev07g1973	224	Coils	Coil	147	167	-	-
	Aev07g1973	224	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Aev07g1973	224	Pfam	K-box region	86	168	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev07g1973	224	MobiDBLite	consensus disorder prediction	204	218	-	-
	Aev07g1973	224	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Aev07g1973	224	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Aev07g1973	224	CDD	MADS_MEF2_like	3	71	IPR033896	GO:0000977\|GO:0045944
	Aev07g1973	224	Gene3D	-	13	80	IPR036879	GO:0003677\|GO:0046983
	Aev07g1973	224	ProSiteProfiles	K-box domain profile.	84	174	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev07g1973	224	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	218	-	-
	Aev07g1973	224	PANTHER	MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1	1	218	-	-
	Aev07g1973	224	SUPERFAMILY	SRF-like	3	72	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev07g1973	Aev-Chr7	20890726	20897775	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev07g1973	1	222	MADS-box Gene Family	AT2G22540	51.883	2.25e-74	223

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aev07g1973		K-box	2.1e-16	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev07g1973	-		-	tcc:18591803	272.322

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev07g1973	07	20890726	20897775	Aev07g1973	07	20890726	20897775	ECH