Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g1725 ATGGAGGAAACAGAAACCACCTCGAAGATGAATCGAAAGGAGAAGCGGAAGGCAATGAAGAAGATGAAGCGGAAGCAGATGAGGAAGGAGACAGCGGTGAAGGGGCGGGCAGAGGAGGAGGCGCGCCTCAACGATCCAGAGGAGCAGAGGAGGATGCAGCTACTTGAGCAGCAGGAGGCTGAGAGGATGGAGAAGGACATGATTCTCTTTGAGGAGAGGGAGAGGGCCCTCATCATGAGACTTGAATTGCAGCAGCAAGAACAAAGCATGGACATTATACAATCACCACAGAGCAAGAACCTTCTCGAAGATTCAGAGGATGACGATCAATGGGAATACGTGGAGGCGGGGCCTCCTGAGATTATCTGGGAAGGAAATTCTATCACCTTCAAGAGGAATAGAGTGAGGGTTAGGGTTTTAGACAAGCAACCAAATCTGCTGCTGGATGCTGATGATAACAGACCTACATCAAATCCTTTCCCCCCGGAATCTCACACAGATTCGTCCACACAGCAGCCGCTCGAGAACTTTTCTCAACAAGTACCCAATTTTGGAACCGAGCAGGACAAAGCTCATTGTCCGTTTCATTTAAAGACAGGAGCGTGTCGATTTGGTCAGCGTTGTAGCAGAGTCCATTTTTACCCTGACAAGTCATGCACCCTTCTTATGAAAAACATGTACAACGGTCCTGGCCTTGCTTGGGAGCAGGATGAAGGCCTTGAGTATACAGATGAGGAGGTTGAACGTTGTTTTGAAGAATTTTATGAGGATGTTCATACAGAGTTCCTGAAGTTTGGAGAAATTGTAAACTTCAAGGTGTGTAAAAATGGTTCATTCCACTTGCGAGGAAATGTCTATGTGCAGTATAAATTTTTGGATTCTGCTCTGCTTGCTTACAACACAGTTAATGGTCGCTACTTTGCTGGGAAACAGGTTAGTTGTAATTTTGTTAATTTGACAAGATGGAAGGTTGCAATATGTGGCGAATACATGAAGTCAGGCTTCAAGACTTGTTCACATGGAACAGCTTGCAACTTTATACACTGTTTCCGGAATCCTGGTGGAGACTATGAATGGGCTGATTCTGATAGACCACCCCCAAAATATTGGATGGAAAAAATGGCTGCTTTATTTGGTTATTCTAATGATGATGAGGCTTTAAGGGACCGAGAAAATTTGAGTGTGCTGAAGAACACCTGCAAGAAGTCAACAACAAATTTTGACAGGTACCACTCAAGTAGATCAAGATCTAGGGAGATGGATCAGTTAAGTAGTTTTTCTGGTAGAAGAAAACATGGAGATGAACGAAAGCGAAGGACTCCTGATGAGGAACGGAATGCAAATTTAAAAGATAATCATAAAATGAAACATAAAACTCCTGATACTGATACTGTTAGGGATTGGTGGGAAAAGGATGAAGATAGGGAAAAACAACATAAACGTACTAGAAAACGCTCGTTACATAGTAACAAGGATGATAATAACAGAAGCCAAGACAAGGATTTTCATATGGATTGGGCTACAACAACTAGGGAAAATGAAATAGAGCATGACAGAGAACCAAGAAAGACACGAAAAGGGAACAGGGATAGCAGGGACTACATATATGAGGCCGAATCAGATGGAGATAGAATAAAGCACCATACTAGCAGAAGGAAAAGGTCAAGACATCAGAGCAGGGACTCCAGAAGTGGTGATGCTGAATCTAATGCAAAATTGTTTGAACTGGGGCATTTAGAGACGTGA 1746 0.4336 MEETETTSKMNRKEKRKAMKKMKRKQMRKETAVKGRAEEEARLNDPEEQRRMQLLEQQEAERMEKDMILFEERERALIMRLELQQQEQSMDIIQSPQSKNLLEDSEDDDQWEYVEAGPPEIIWEGNSITFKRNRVRVRVLDKQPNLLLDADDNRPTSNPFPPESHTDSSTQQPLENFSQQVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKSCTLLMKNMYNGPGLAWEQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKFLDSALLAYNTVNGRYFAGKQVSCNFVNLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDRPPPKYWMEKMAALFGYSNDDEALRDRENLSVLKNTCKKSTTNFDRYHSSRSRSREMDQLSSFSGRRKHGDERKRRTPDEERNANLKDNHKMKHKTPDTDTVRDWWEKDEDREKQHKRTRKRSLHSNKDDNNRSQDKDFHMDWATTTRENEIEHDREPRKTRKGNRDSRDYIYEAESDGDRIKHHTSRRKRSRHQSRDSRSGDAESNAKLFELGHLET* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g1725 581 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 12 568 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aev07g1725 581 MobiDBLite consensus disorder prediction 407 581 - -
Aev07g1725 581 MobiDBLite consensus disorder prediction 407 480 - -
Aev07g1725 581 MobiDBLite consensus disorder prediction 1 48 - -
Aev07g1725 581 MobiDBLite consensus disorder prediction 157 174 - -
Aev07g1725 581 MobiDBLite consensus disorder prediction 487 546 - -
Aev07g1725 581 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872
Aev07g1725 581 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 12 568 - -
Aev07g1725 581 PRINTS U2 auxiliary factor small subunit signature 276 298 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aev07g1725 581 PRINTS U2 auxiliary factor small subunit signature 303 327 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aev07g1725 581 PRINTS U2 auxiliary factor small subunit signature 341 353 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aev07g1725 581 PRINTS U2 auxiliary factor small subunit signature 212 232 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aev07g1725 581 PRINTS U2 auxiliary factor small subunit signature 193 212 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aev07g1725 581 PRINTS U2 auxiliary factor small subunit signature 248 263 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aev07g1725 581 MobiDBLite consensus disorder prediction 13 30 - -
Aev07g1725 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 319 IPR000504 GO:0003723
Aev07g1725 581 MobiDBLite consensus disorder prediction 146 174 - -
Aev07g1725 581 SMART rrm2_1 249 315 IPR003954 GO:0003676
Aev07g1725 581 MobiDBLite consensus disorder prediction 559 581 - -
Aev07g1725 581 SMART c3hfinal6 188 214 IPR000571 GO:0046872
Aev07g1725 581 SMART c3hfinal6 321 350 IPR000571 GO:0046872
Aev07g1725 581 Gene3D - 218 317 IPR012677 -
Aev07g1725 581 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 212 IPR000571 GO:0046872
Aev07g1725 581 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 349 IPR000571 GO:0046872
Aev07g1725 581 SUPERFAMILY RNA-binding domain, RBD 251 319 IPR035979 GO:0003676
Aev07g1725 581 Coils Coil 10 30 - -
Aev07g1725 581 CDD RRM_U2AFBPL 220 318 - -
Aev07g1725 581 MobiDBLite consensus disorder prediction 31 48 - -
Aev07g1725 581 ProSiteProfiles Zinc finger C3H1-type profile. 321 351 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g1725 Aev-Chr7 18148309 18154698 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev07g1725 zf-CCCH 1.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev07g1725 K24273 - cam:101495256 666.381