Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g1258 ATGGCTGTTCTTGAGAATGCTGGGGCAAAAATTGATTCTTCGAGTCAAGATTTGGACGGAAGTGTAGTGTCATCGGACTCAACTGTCCCAAACGAAGCAGAGAAATCGAAACTACCCAAAAGCAATTCTGTTGGAAATGGTGCAGACAACGATCTAAATCTTAACGGTGTGTTCAACCATCAACAACAAGACAGAGGGGTTCCGACCACTGTGTCAGCCCCAAACAACGGAGATTACAAGGCCCAAATGGGTCAGATGCGGAACTGTATCGTTCAGGGTCAGCAGATTGTGGTGGTGGACAATGGTGGTGGAGGATATGGGATTAATGGTAGTAACGGTGTGAGGAATGGTGGTGAGGATGGTGGTGAGAGCTTCAAGCGTGATATGAGGGATTTGGCTGAGCTTTTATCGAAGTTGAATCCCATGGCTGAGGAATTTGTGCCGCCTTCGCTTGCCAAGAATCATGGGTACTTACCAGGTGGAGGTGGTGGATTCCGGTACACTAACAATTTTCTGCTCCCTTATGGCAATGCTAATGAACACGTCAATAGAAGGAGAAAGAATGGCTACAGTCAGGGGAAGCGAAGAGCGAATCACAAAATAGAAATGGAGAAAAGGGAAGACATGATTAGGAGGACCGTTTATGTGTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTTGCGGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTATGTGGGGATCCAAATTCTATTCTTCGATTTGCCTTCATCGAGTTTACTGATGAAGATTGTGCAAGAGCTGCTTTGAACTTGTCTGGCACCATGCTTGGTTATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCCATAGCGCCAGTAAATCCATCGTATTTGCCCCGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATTGACAAGAAGGTTACTCAAGCTGATGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGTTTGAGGCTTCTTGGGGATTATCATCATTCCACTCGAATTGCATTTGTGGAGTTCACAATAGCTGAAAGTGCAATTGCAGCTCTAAACTGTAGTGGTGTGGTTTTGGGTTCACTGCCTATAAGGGTAAGCCCATCGAAGACACCAGTAAGGTCTCGCGCACCTCGTACTTCAATGCATTGA 1194 0.4539 MAVLENAGAKIDSSSQDLDGSVVSSDSTVPNEAEKSKLPKSNSVGNGADNDLNLNGVFNHQQQDRGVPTTVSAPNNGDYKAQMGQMRNCIVQGQQIVVVDNGGGGYGINGSNGVRNGGEDGGESFKRDMRDLAELLSKLNPMAEEFVPPSLAKNHGYLPGGGGGFRYTNNFLLPYGNANEHVNRRRKNGYSQGKRRANHKIEMEKREDMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDCARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSYLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTIAESAIAALNCSGVVLGSLPIRVSPSKTPVRSRAPRTSMH* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g1258 397 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 397 - -
Aev07g1258 397 CDD RRM2_CID8_like 305 386 IPR034825 -
Aev07g1258 397 MobiDBLite consensus disorder prediction 9 55 - -
Aev07g1258 397 SUPERFAMILY RNA-binding domain, RBD 183 289 IPR035979 GO:0003676
Aev07g1258 397 CDD RRM1_CID8_like 210 289 IPR034823 -
Aev07g1258 397 SUPERFAMILY RNA-binding domain, RBD 297 391 IPR035979 GO:0003676
Aev07g1258 397 Pfam Ataxin-2 C-terminal region 136 150 IPR009818 -
Aev07g1258 397 MobiDBLite consensus disorder prediction 1 55 - -
Aev07g1258 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 385 IPR000504 GO:0003723
Aev07g1258 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 287 IPR000504 GO:0003723
Aev07g1258 397 Gene3D - 175 289 IPR012677 -
Aev07g1258 397 Gene3D - 293 393 IPR012677 -
Aev07g1258 397 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 397 - -
Aev07g1258 397 SMART rrm1_1 310 381 IPR000504 GO:0003723
Aev07g1258 397 SMART rrm1_1 213 283 IPR000504 GO:0003723
Aev07g1258 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 276 IPR000504 GO:0003723
Aev07g1258 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g1258 Aev-Chr7 11183569 11195613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev07g1258 211 380 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 2.89e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev07g1258 - - aip:107622933 560.451