Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev07g1229 | ATGTCTCGTGTATATGTTGGTAACCTTGATTCAAGAGTCACTGAGAGGGATCTTGAAGACGAGTTTCGTGTCTTCGGAGTTATACGGAGTGTTTGGGTTGCAAGGAGGCCACCTGGTTATGCTTTTATTGACTTTGATGACGGTAGAGATGCACGTGATGCTATTCGGGAATTGGATGGCAAAAATGGTTGGAGGGTTGAGCTTTCTCACAATTCTAGAGGTGGAGGCGGTGGTGGTCGTGGAGGTGGTCGTGGTCGCTCTGGTGGTTCTGATTTGAAATGCTATGAGTGCGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGCATGCGTGGTGGTTCAGGAAGACGTCGTAGCCGCAGCCCACCTCGGTTCCGTAGGAGCCCAAGTTATGGTCGTAGAAGTTACAGTCCACGACGATCCCCTAGGCGCCGGAGCGTGTCACCCCGTGGAGGCAGCTACAGCAGGTCACCTCCTTACCGTGGTCGTGAGGAGCTTCCGTATGCTAATGGAAATGGCATTAAGGAACGACGCCGAAGCAGAAGTTGA | 546 | 0.522 | MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDGRDARDAIRELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRRSPRRRSVSPRGGSYSRSPPYRGREELPYANGNGIKERRRSRS* | 182 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev07g1229 | 181 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 173 | - | - | |
Aev07g1229 | 181 | MobiDBLite | consensus disorder prediction | 98 | 113 | - | - | |
Aev07g1229 | 181 | SMART | c2hcfinal6 | 93 | 109 | IPR001878 | GO:0003676|GO:0008270 | |
Aev07g1229 | 181 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 61 | IPR000504 | GO:0003723 | |
Aev07g1229 | 181 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 88 | IPR035979 | GO:0003676 | |
Aev07g1229 | 181 | Gene3D | - | 1 | 73 | IPR012677 | - | |
Aev07g1229 | 181 | ProSiteProfiles | Zinc finger CCHC-type profile. | 93 | 108 | IPR001878 | GO:0003676|GO:0008270 | |
Aev07g1229 | 181 | SMART | rrm1_1 | 3 | 69 | IPR000504 | GO:0003723 | |
Aev07g1229 | 181 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 | 2 | 173 | - | - | |
Aev07g1229 | 181 | CDD | RRM_SRSF3_like | 3 | 71 | - | - | |
Aev07g1229 | 181 | Pfam | Zinc knuckle | 93 | 108 | IPR001878 | GO:0003676|GO:0008270 | |
Aev07g1229 | 181 | SUPERFAMILY | Retrovirus zinc finger-like domains | 86 | 110 | IPR036875 | GO:0003676|GO:0008270 | |
Aev07g1229 | 181 | Gene3D | - | 88 | 149 | - | - | |
Aev07g1229 | 181 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 73 | IPR000504 | GO:0003723 | |
Aev07g1229 | 181 | MobiDBLite | consensus disorder prediction | 66 | 181 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev07g1229 | Aev-Chr7 | 10870753 | 10874202 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev07g1229 | 2 | 60 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 39.683 | 3.17e-06 | 44.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev07g1229 | K12896 | - | tcc:18587644 | 241.121 |