Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g0478 ATGATAGGGTTTGGAGGGAACAGTTGCAGTGGTATTTCTTCCATGGACATGATGATGAACATTGATGGTGATACCAACAACAATAGGAAGGTTATTCCTTCTATGGCTGTTATTAGCAACAACAACAACAACTCTGGAGTACAGAACAGAAGGGTTTCTGTGTTGAACATGGCTCATCATCATCAAAATCATCATAACAACAACAATACTTGCAGTAATAGTAATAGTGTGAGGGATAAGATCATGGCACACCCTCTCTTCCCTCGTTTATTGTCCTCATACCTCAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGGTTAGAGGAGTTAAGTGCAAAATGTGAATCATCATCAATTCATCAGTATCATCATCATCTTCATGATCATGTATCTGATCAGAAGATGAGTGATGGTGGTTCCACCACCGTTGGATCAAGCATAGGTGGTGGTGGTGAAGTAGATCCAGGACTGGATCAGTTCATGGAGGCATACTGTGAGATGCTAATAAAGTATGAGCAAGAGCTCTCTAAACCCTTCAAAGAAGCAATGCTCTTCTTCTCAAGAATTGAGTCTCAGCTTAAGGCTCTTTCACTCTCTTCTTCATCAACAACACTAGACCACTTTGGTCATCATCATAATCATCATGAGAGTGAATCATCATCATGTCCCAATAATATAATTGGGGTTGATGAAAAGAGCAAGAACATGATGATGATGGAAAGTCAAATGTTATCAGAAGAGAGGGAACTGAAGATGCAGCTTCTGCGCAAGTACAGTGGGTATCTGGGAGGACTCAAGAAGGAATTTCTTAAGAAGAAGAAAAATGGGAAATTGCCCAAAGAAGCTCGCCACCAACTCCTTGATTGGTGGAACAGACACTACAAATGGCCTTATCCTTCGGAATCACAGAAGCAGGGACTAGCAGAATCAACAGGGCTAGATCTGAAGCAGATAAACAATTGGTTCATAAATCAGAGGAAACGGCATTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCAACTAATCACTACATTGAGACTATTATGTGCAAGCCTTTCCCCATAGATGCCATGCCTATCCTCTTCTAA 1107 0.4164 MIGFGGNSCSGISSMDMMMNIDGDTNNNRKVIPSMAVISNNNNNSGVQNRRVSVLNMAHHHQNHHNNNNTCSNSNSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVARLEELSAKCESSSIHQYHHHLHDHVSDQKMSDGGSTTVGSSIGGGGEVDPGLDQFMEAYCEMLIKYEQELSKPFKEAMLFFSRIESQLKALSLSSSSTTLDHFGHHHNHHESESSSCPNNIIGVDEKSKNMMMMESQMLSEERELKMQLLRKYSGYLGGLKKEFLKKKKNGKLPKEARHQLLDWWNRHYKWPYPSESQKQGLAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNHYIETIMCKPFPIDAMPILF* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g0478 368 SUPERFAMILY Homeodomain-like 274 345 IPR009057 -
Aev07g0478 368 Pfam KNOX2 domain 156 199 IPR005541 GO:0003677|GO:0005634
Aev07g0478 368 Pfam ELK domain 252 273 IPR005539 GO:0003677
Aev07g0478 368 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Aev07g0478 368 SMART KNOX1_2 75 119 IPR005540 GO:0003677|GO:0005634
Aev07g0478 368 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677
Aev07g0478 368 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
Aev07g0478 368 Pfam KNOX1 domain 77 118 IPR005540 GO:0003677|GO:0005634
Aev07g0478 368 ProSitePatterns 'Homeobox' domain signature. 310 333 IPR017970 GO:0000981|GO:0006355
Aev07g0478 368 SMART ELK_2 252 273 IPR005539 GO:0003677
Aev07g0478 368 CDD homeodomain 284 336 IPR001356 GO:0003677
Aev07g0478 368 Gene3D - 270 343 - -
Aev07g0478 368 SMART HOX_1 274 339 IPR001356 GO:0003677
Aev07g0478 368 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 359 - -
Aev07g0478 368 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 359 - -
Aev07g0478 368 SMART KNOX2_2 150 201 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g0478 Aev-Chr7 2892589 2896602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev07g0478 59 362 Homeobox Transcription Factor Family AT1G62360 54.516 3.85e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aev07g0478 KNOX2 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev07g0478 - - gmx:100791704 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev07g0478 07 2892589 2896602 Aev07g0478 07 2892589 2896602 ECH