Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g0177 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGGATTTCATGGGACACTGATGAGGAACGCCTCAAGGAATACTTTGGGAAATTTGGGGAGGTGATTGAGGCTGTGATCATGAGAGATCGCGCCACGGGGCGCGCTCGCGGCTTCGGTTTCATAGTCTTTGCTGATCCTGCTGTTGCTGAAAGAGTCATTGTGGATAAGCACATAATCGATGGCCGCACTGTTGAAGCAAAGAAGGCTGTTCCTAGGGATGATTCTCAAACTATAAATAGGCAGCCTGGTAGTGTGCACGGATCTCCTGGTCCCGGACGCACAAAGAAGATCTTTGTTGGAGGTTTACCATCAACAATCACAGAAAGTGATTTCAAGACTTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTTATGTATGATCACAATACTCAAAGGCCAAGAGGATTCGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGATCGAGTTCTCTATAAAACATTTCATGAACTCAATGGGAAGATGGTTGAGGTCAAGAGAGCAGTTCCCAAAGAGCTTTCACCTGGACCCAACCGGAGCCCATTGATTGGATATAACTATGGTTTGAATAGGGCAAGTAGCTACCTAAACAATTATACTCAGGGTTTTAACATTAATCCTTTAGGAGGCTATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTCACTAGTGGTAGAAGTGGGTTTTCCCCATTTGGCTCCAGTGGTTATGGAATGGGGATGAATTTGGATTCTGGATTGAGTCCAAGCTATGGAGGGACTTCCAATTATGGGAACGGTCTAGGATATGGTCGAATATTCAGTCCCTTCTATAGTGGCAACTCAAGCAGGTATAACACTCCTATTGGCTTCACCGGGGCCAATGCAAGAAGCGATTCTCTTACGAACTCAACTTCTCGGAATGTCTGGGGAAATGGGGGCCTGAATAATGCTACCAATAATCCAGTCAGCCCTGGTGCTTACTTGGGAACCGGAAGTGGGGCTTTTGGTGTTTCGATTGGAAATAGTGGCACAAATTGGGGTCCTTCTGGTCCAACCCAGGGTGGAGGGGCTGCTTCCGGCTATACCACCTGGAACAACGTTTATGAAGGCAGAGATATCAGCATTGGATTAGGAGGGGGAGGGTATGGAAGGAACAGCAGTCCGGGTGTGACCCAATCCTCTACATTGACTGCACAAGCCGGGGGTTATGAAGGATCCTATGGGGACATATACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCGGTCTGCTGCTTCTGAGATGGATGCTTCTGGCTCATTTGGGTATGGACTAGGTGGCATAGCTTCAGACGATCCGGTAAAGAGTTCTGAGGGTTTTATTGGGAACTACAATGTAACAAGTAGACAACCTAATAGAGGAATTGCGGCCTAG 1437 0.4683 MESDLGKLFIGGISWDTDEERLKEYFGKFGEVIEAVIMRDRATGRARGFGFIVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDSQTINRQPGSVHGSPGPGRTKKIFVGGLPSTITESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPNRSPLIGYNYGLNRASSYLNNYTQGFNINPLGGYGVRMDGRFSPLTSGRSGFSPFGSSGYGMGMNLDSGLSPSYGGTSNYGNGLGYGRIFSPFYSGNSSRYNTPIGFTGANARSDSLTNSTSRNVWGNGGLNNATNNPVSPGAYLGTGSGAFGVSIGNSGTNWGPSGPTQGGGAASGYTTWNNVYEGRDISIGLGGGGYGRNSSPGVTQSSTLTAQAGGYEGSYGDIYRSGSVYSDSTWRSAASEMDASGSFGYGLGGIASDDPVKSSEGFIGNYNVTSRQPNRGIAA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g0177 478 Gene3D - 6 87 IPR012677 -
Aev07g0177 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Aev07g0177 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
Aev07g0177 478 SUPERFAMILY RNA-binding domain, RBD 90 193 IPR035979 GO:0003676
Aev07g0177 478 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Aev07g0177 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aev07g0177 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Aev07g0177 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Aev07g0177 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Aev07g0177 478 Gene3D - 105 185 IPR012677 -
Aev07g0177 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aev07g0177 478 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Aev07g0177 478 MobiDBLite consensus disorder prediction 80 105 - -
Aev07g0177 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Aev07g0177 478 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g0177 Aev-Chr7 998534 1000889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev07g0177 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.592 2.55e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev07g0177 K14411 - gmx:100805131 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev07g0177 07 998534 1000889 Aev07g0177 07 998534 1000889 ECH