Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g0063 ATGCAAGCAGATAATGGCAAGTTATTCATTGGTGGGATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGCACTTATGGGGAGGTTGTGGAAGCTGTGATAATGAAGGATCGGACAACAGGCAGAGCCCGTGGATTTGGTTTTGTTGTTTTCTCGGACCCGGCTGTGGCAGAAGTAGTCATAAAAGAGAAGCATAACATTGACGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCTAGGGATGATCAGAATATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATTTTTGTTGGAGGTTTAGCTTCTACAGTGACGGAAAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTGGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGTTTCATCACTTATGATTCTGAGGAGGCTGTTGACAAGGTCTTACTTAAGACTTTCCATGAATTAAATGGTAAAATGGTTGAGGTCAAGCGAGCTGTTCCTAAGGAGTTATCGCCGGGACCAAGCCGTAGCCCGATAGGTGGATTTAACTATGGTCTGAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAAGGGTATACTCCGAGTGCTGTTGGTGGGTATGGACTTCGGATGGATGGTAGATTCAGTCCGGTTGCTGGTGGTCGAAGTGGATTTGCTCCTTTTGGATCTGGTTATGGAATGAATATGAATATGAATTTTGAGCCTGGTTTGAGTGCTGGTTTTGGGGGTAATGCAAATTTCAATAGTAACCTTAGCTATGGTCGGGGAATGAGTCCTTATTATATTGGCAGCTCCAATCGGTTTGGCAGCCCCGTTGGATACGACAGTGGTAATGGAGGAAACAACTCTTTCTTCAGCTCTGCTACCCGTAATTTGTGGGGGAATGGTGGCCTCAGTTATGGAACAAACTCAGCAAATTCCAGTGCATACATTGGATCGGGGAGTGGGAGTGTTGGAGGAAACACATTTGGCAATACTGGAGTCAACTGGGGTTCTCCAGCAATTTCTGAACAAGGGGGAGGGAACAATGTGCTGCAGAATAGTGGCAACCTTGGCTATGGTGGTGGTGACAGCAGTTATGGCTTGGGAAGTGGAGGGTATGGAAGAAGCAGTGGTTCTGCTATTGCCCCAACATCTTCATATTCTGCAACAAATGGTAGTGTTGATGGTGCTTTTGCCGATTTTTACAATAATAGTTCTGTTTATGGGGACCCCACTTGGCGTTCGTCTAATTCTGAGCGAGATGGATCTGGTCCCTTCAGTTATGGACTTGGCGGTTCAGCCACAGATGTTTCTGGCAAAAGTTCTCCTGGTTATGTTGGTGGTTATACTATTAATAAGAGGCAGCCAAATAGGGGAATTGCTACATAG 1443 0.4539 MQADNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEVVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPIGGFNYGLSRVNSFLNGFTQGYTPSAVGGYGLRMDGRFSPVAGGRSGFAPFGSGYGMNMNMNFEPGLSAGFGGNANFNSNLSYGRGMSPYYIGSSNRFGSPVGYDSGNGGNNSFFSSATRNLWGNGGLSYGTNSANSSAYIGSGSGSVGGNTFGNTGVNWGSPAISEQGGGNNVLQNSGNLGYGGGDSSYGLGSGGYGRSSGSAIAPTSSYSATNGSVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFSYGLGGSATDVSGKSSPGYVGGYTINKRQPNRGIAT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g0063 480 SUPERFAMILY RNA-binding domain, RBD 102 202 IPR035979 GO:0003676
Aev07g0063 480 Gene3D - 103 189 IPR012677 -
Aev07g0063 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 480 - -
Aev07g0063 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Aev07g0063 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aev07g0063 480 Gene3D - 4 88 IPR012677 -
Aev07g0063 480 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Aev07g0063 480 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Aev07g0063 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aev07g0063 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 480 - -
Aev07g0063 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Aev07g0063 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Aev07g0063 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Aev07g0063 480 MobiDBLite consensus disorder prediction 430 480 - -
Aev07g0063 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g0063 Aev-Chr7 393249 395917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev07g0063 8 270 Eukaryotic Initiation Factors Gene Family AT1G71770 28.197 2.24e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev07g0063 K14411 - gmx:100795907 821.617