Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3854 ATGCCTCCAAGGACAGTGAAGAGAGGCGGTGCGGCGAAGAGAGCAAATGCTGCGCTTGAAAACAATGACAAGAAGAAGAAGAAGCAAGAGCCTGAAACTGCGGAAACGGTTGTGAATCATGAAGATGAAGAAAACGCAGTTAATAAGGAGAAAAGTGTTGTTGTGGTAGAGGAGAAGCCGGATGATGTGAAAAACAATGAAGAGGATGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACACTTAGATTTTGAGGATAACTATCCTGATTATGAACCTTTGGAGTATGGTGGAGATGACTATGATGATGAAAATGAACCGGATGAGGGTCAGGAGGTGGGAGGTGAAGTGGAGGATGAACAAGAAGGAAATGTAGGGGAAGAAGAGGCTGATACAGGTGATGAAGAAATTGAATACGTTTATGAAGAAGTTGAGGTCGATGAAGATGATGAGCATGCTGATGAGGAGCTTGATCCTGCACAGATGGGTGATGTGGAGGAAGAGAAGCACTCTGAAGGTATAAAGGAGAGGCAAAAGCAGAGGGAATTTGAAGTATTTGTTGGGGGACTAGATAAGGATGCTACTGAGGATGACCTAAGGAAGGTTTTCAGTCCAGTTGGGGTAATTGCTGAAGTCAGGCTGGTTCTGAATCCTCAGACTAAGAAGAACAGAGGATTTGCATTTTTGCGTTTTGAAACTGTTGAACAAGCAAAAAGAGCTGTGGCAGAGTTAAAAAATTCAGTGATTAATGGCAAACACTGCCGTGTTTCTCCTGTTCATGACGATGATACCCTCTATTTGGGTAACATATGCAAGACATGGAAAAAGGAAGCTCTAAAGGATAAGTTGAAACATTATGGAGTTGAAAATGTTGAGAATTTGACTTTAGTAGAAGATAGTAGCAATGAGGGAATGAGTCGCGGATTTGCATTTTTGGAATTTCAATCTCGTTCTGAGGCTAAGAAAGCTTATAAGCTACTGCGGAAGAAAGATGTAATGTTTGGGGTGGATAAGCCAGCAGAGGTTTCCTTTACGAACTCTGTTATTGACCCTGTTGATGGGATTATGGCACAGGTTAAAACTGTATTTATAGATTCACTGCCTCCTTCATGGGATGAAGATTATGTCCGGGATCTCCTTAAGAAATATGGGGAGATTGAAAAAATTGAGCTTGCCAGGAACATGCCAGCTGCCCGCAGGAAGAATTATGGATTTGTTACATTTGGTTCGCATGATGCTGCTGTGGAATGTGCTGAGAGCATTACCAGTGCAGGGTTAGGTGAAGGTGACAAGAAGGCTAAAGTCAGGGCTAGATTGTCAAGACCTCTTGGGAAAGGCAGTAGAAAACACATTAGCAATGGTGCCTACCATTCTGGTCGCAATTCTGGAAGATCAGCAGGGCCTTCAAGGAGTCGAACGGCACCACGTAATCTTCCTGCTCGCACGGTGAAAGGACCTGGAAGACGTGTTCCACCAGTTAGGCCTGTTAGGATGAGAGATAGACGTCCTGCTATGTCGATTCCAGTTAGAGCAAGGCCAGCAGCTCATTCAGCTAGATACTCTGACAAGAGATCAACTGCACCTGGATATTCAAAAAGTAGCATGAAGAGAGACTATGGTCGACGTGAAGATCTGCCACCTCCAAGAAGTAGAGTCTCTGCAGACTATGGCTCTAGAGTGGCCTCTCAAAGACACCCTTCTTACAGGGATTATCCAGCTCATGGCTCTGGGTACGCTGAGCTGCATAAAAGTCCATCTCGTGCTGCAGCAGCTGCACCAAGGAGAGGTTATGTAGATGATGACTATGGCCAAAGATTTGAGAGACCTCTTCCTTCTTCCCATCTAAGTCACCGTGAAGTACGCTACCGTGATTATGACTCTCTGTCTGGTTCAAAACGTCCTTATGCTGTCATAGATGATGTTCCTCCACGGTATACAGATACTGGTGCTCGCCAATCAAGATCACGTTTGGACTATGAGTATGGGGGCAGTACTTCACAGTATGGAGATGCCTATGCCGATAGACTTGGAAGATCTAGTCTTGGCTATAATGGCAGCAGAAGTTCGATTTCTACTCATGACTCGCACGGGATGTATGGCAGTCGGCAGAGCATGAGCTATAGCAGAGGTTCTTTTGGTGGTAGTGATGGTGGTTTGTATTCATCAAGTTATGGTGCTGATTACATATCTCGTGGAAGTGATGTTGGTGGTAGGCTTGGCCATGTTCTTTTTCACTTGGCCAGAGACAAGGCTACTGACGTTATCTTAGGAGTTAGGGCTAAGGATTATTGGAATTATTTGCTGCTCTCGCGAAGTCGGAAAAAAGGAGGAAAACGTGTCGTTATTTTTGCCAAGAAAGCAATCACCTTTGGCTTTGTGTTTGTTGCCGAGTTCATGATGAAAAAAACCTGCGAAGGTGGTTGCAGTTATCGTTATTACAGGCCCAGCACTGCATCCGTGTCTTCAATGCAGGAGTTGGATGACATTGGTGCTCTTGATCATTTGAGGAGCCATCAAGAAGAAGAAGGTCCATGTTGTGGCGGGGTTGAGCATTTGGAGCTTTGGGGTGATGCTGTGAAATGGGGAGCTGAATTCAGGGTCAATTCCTCTGAGGAGTGCTGCATGGCTTGTAGGAGGATGTGTAGGGGTGGTGGTGGTCCTTGTTTGTGTAATTCATGGGTGTTTTGTGGCGATACAGAGGCATGTGGACCTAGATTTGGTGAGTGTTGGCTTAAAAGACAAAAGGATGCTTTGAACCCAGAACGACGAGATTCTGGAGATAAAGTTATGTGGACTTCTGGGCTTGTCTTTGGCAAGGGAGAGGGAATTGTTGGTCTGGAAACTGACTATGGAATTCTTCGTATAAAAATTTTGCCTGAGTGTGCTCCGCAATCTGTTTCCTACATTCTTGAGCTGTTGGCATTGCCTCATTGCATGGGCTGCCAGATTTTTCGTGCTGAAAGCCGAGGAAGCTTTTGGGACTCAGAAGGAAACCACGTAAAAAAAGCTCCATTTGGTCCTCCTTATGCCCTAATCCAAGGAACATTTGAATCCCTTGGTTATACATTCAAGGATATTCCAAAAGAACATTGTCCTACCATAAGAAGAGGATCTGTTGCATGGATTGGTTCAGGTCCCGAATTCTTTATCAGCCTGGCTAATCACAATGAATGGAGAAATGCATACACCGTTTTCGGCTTCGTTCTACCTGAAGATGTGGAAATTTTGGAAAGATTTGTTCAGCTTCCAACTAAACCCGAGGTTTGGAATGACATAAATGTATCTGTCTTGGAGAACCCAATTTCGTTACGGTTTCGGAGAATTACCACACAGTCATAA 3342 0.4449 MPPRTVKRGGAAKRANAALENNDKKKKKQEPETAETVVNHEDEENAVNKEKSVVVVEEKPDDVKNNEEDVKESIDEYEKDEHLDFEDNYPDYEPLEYGGDDYDDENEPDEGQEVGGEVEDEQEGNVGEEEADTGDEEIEYVYEEVEVDEDDEHADEELDPAQMGDVEEEKHSEGIKERQKQREFEVFVGGLDKDATEDDLRKVFSPVGVIAEVRLVLNPQTKKNRGFAFLRFETVEQAKRAVAELKNSVINGKHCRVSPVHDDDTLYLGNICKTWKKEALKDKLKHYGVENVENLTLVEDSSNEGMSRGFAFLEFQSRSEAKKAYKLLRKKDVMFGVDKPAEVSFTNSVIDPVDGIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFGSHDAAVECAESITSAGLGEGDKKAKVRARLSRPLGKGSRKHISNGAYHSGRNSGRSAGPSRSRTAPRNLPARTVKGPGRRVPPVRPVRMRDRRPAMSIPVRARPAAHSARYSDKRSTAPGYSKSSMKRDYGRREDLPPPRSRVSADYGSRVASQRHPSYRDYPAHGSGYAELHKSPSRAAAAAPRRGYVDDDYGQRFERPLPSSHLSHREVRYRDYDSLSGSKRPYAVIDDVPPRYTDTGARQSRSRLDYEYGGSTSQYGDAYADRLGRSSLGYNGSRSSISTHDSHGMYGSRQSMSYSRGSFGGSDGGLYSSSYGADYISRGSDVGGRLGHVLFHLARDKATDVILGVRAKDYWNYLLLSRSRKKGGKRVVIFAKKAITFGFVFVAEFMMKKTCEGGCSYRYYRPSTASVSSMQELDDIGALDHLRSHQEEEGPCCGGVEHLELWGDAVKWGAEFRVNSSEECCMACRRMCRGGGGPCLCNSWVFCGDTEACGPRFGECWLKRQKDALNPERRDSGDKVMWTSGLVFGKGEGIVGLETDYGILRIKILPECAPQSVSYILELLALPHCMGCQIFRAESRGSFWDSEGNHVKKAPFGPPYALIQGTFESLGYTFKDIPKEHCPTIRRGSVAWIGSGPEFFISLANHNEWRNAYTVFGFVLPEDVEILERFVQLPTKPEVWNDINVSVLENPISLRFRRITTQS* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3854 1113 MobiDBLite consensus disorder prediction 428 596 - -
Aev06g3854 1113 CDD RRM_SF 266 334 - -
Aev06g3854 1113 Gene3D - 127 259 IPR012677 -
Aev06g3854 1113 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 945 1087 IPR002130 GO:0000413|GO:0003755
Aev06g3854 1113 SMART rrm1_1 185 258 IPR000504 GO:0003723
Aev06g3854 1113 SMART rrm1_1 265 344 IPR000504 GO:0003723
Aev06g3854 1113 SMART rrm1_1 362 437 IPR000504 GO:0003723
Aev06g3854 1113 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 744 - -
Aev06g3854 1113 MobiDBLite consensus disorder prediction 536 550 - -
Aev06g3854 1113 MobiDBLite consensus disorder prediction 90 163 - -
Aev06g3854 1113 Gene3D - 263 347 IPR012677 -
Aev06g3854 1113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 348 IPR000504 GO:0003723
Aev06g3854 1113 Gene3D - 354 478 IPR012677 -
Aev06g3854 1113 MobiDBLite consensus disorder prediction 164 178 - -
Aev06g3854 1113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Aev06g3854 1113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 333 IPR000504 GO:0003723
Aev06g3854 1113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 363 421 IPR000504 GO:0003723
Aev06g3854 1113 SUPERFAMILY RNA-binding domain, RBD 265 421 IPR035979 GO:0003676
Aev06g3854 1113 MobiDBLite consensus disorder prediction 1 178 - -
Aev06g3854 1113 MobiDBLite consensus disorder prediction 455 477 - -
Aev06g3854 1113 CDD RRM_SF 363 437 - -
Aev06g3854 1113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 361 443 IPR000504 GO:0003723
Aev06g3854 1113 PANTHER RNA RECOGNITION MOTIF 1 744 - -
Aev06g3854 1113 Gene3D - 939 1100 IPR029000 -
Aev06g3854 1113 Gene3D Hepatocyte Growth Factor 852 938 - -
Aev06g3854 1113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 262 IPR000504 GO:0003723
Aev06g3854 1113 SUPERFAMILY RNA-binding domain, RBD 181 261 IPR035979 GO:0003676
Aev06g3854 1113 SUPERFAMILY Cyclophilin-like 940 1088 IPR029000 -
Aev06g3854 1113 MobiDBLite consensus disorder prediction 18 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3854 Aev-Chr6 38357163 38366091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3854 186 422 Eukaryotic Initiation Factors Gene Family AT4G34110 25.581 3.31e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3854 - - gmx:100811387 912.909