Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3814 ATGGGAGAGAAATTAGATCAAGTGTTGGGGTTGGGTTTGAGTTTGAGCTTGGGAGGATCTGCTTTGAAGGAGAATCACATGCAACAATCGGTTGCTATGAAGAGTTCTTCCTCCAATCACCTGTTTCTGTTACCACCACCTGCTGCCGCAGATAGAACCTCAGACTCCGATGCGAGGCCGTTCCTCGGAGGAATTGACATGAATTTGGCGCCGGTTCCAGATTGCGAGGACGACGACCACGACAACTGCGATAACAGCACCGTATCGAGCAGCAGCGGCAAGAGGAGCGAGAGAGAAGAGGATAACGGCGCCGGTGCCGCCACCGAATTCGACGAGGAGGACGGTGGCGGCAGCGGCGACATGCCGAGGAAGAAGCTGAGGCTGACGAAGGAACAATCCGTGTTGTTGGAAGAAATGTTCAGGCAGCATAACACGCTGAACTCGAAACAAAAGCAAGCATTGGCAAAGGAATTGAATCTAAGGCCAAGACAAGTAGAAGTGTGGTTTCAGAACAGACGAGCAAGGACCAAGTTGAAGCAGACAGAAGTGGACTGTGAATACTTGAAGAGATGTTGTGAGAATCTAAGTGAAGAGAATAGGAGGTTGCATAAGGAAGTTCAAGAGCTCAGGGCATTGAAGTTATCTCCACACCTCTACATGCATATGAACCCTCCTACCACTCTTACCATGTGCCCTTCCTGCGAGCGCGTCGCCACGTCATCCTCCTCTTCCGGCACTACTGCTCACTCGGCAGCGTAG 759 0.5138 MGEKLDQVLGLGLSLSLGGSALKENHMQQSVAMKSSSSNHLFLLPPPAAADRTSDSDARPFLGGIDMNLAPVPDCEDDDHDNCDNSTVSSSSGKRSEREEDNGAGAATEFDEEDGGGSGDMPRKKLRLTKEQSVLLEEMFRQHNTLNSKQKQALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLSEENRRLHKEVQELRALKLSPHLYMHMNPPTTLTMCPSCERVATSSSSSGTTAHSAA* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3814 252 Pfam Homeobox associated leucine zipper 179 213 IPR003106 GO:0006355|GO:0043565
Aev06g3814 252 SMART HOX_1 121 183 IPR001356 GO:0003677
Aev06g3814 252 MobiDBLite consensus disorder prediction 43 125 - -
Aev06g3814 252 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Aev06g3814 252 SUPERFAMILY Homeodomain-like 114 180 IPR009057 -
Aev06g3814 252 CDD homeodomain 122 180 IPR001356 GO:0003677
Aev06g3814 252 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Aev06g3814 252 PANTHER - 8 251 - -
Aev06g3814 252 Pfam Homeodomain 123 177 IPR001356 GO:0003677
Aev06g3814 252 Gene3D - 127 177 - -
Aev06g3814 252 SMART halz 179 222 IPR003106 GO:0006355|GO:0043565
Aev06g3814 252 Coils Coil 192 212 - -
Aev06g3814 252 Pfam HD-ZIP protein N terminus 1 99 IPR006712 GO:0005634
Aev06g3814 252 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 8 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3814 Aev-Chr6 38099871 38101911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3814 55 236 Homeobox Transcription Factor Family AT3G60390 65.238 7.98e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aev06g3814 HD-ZIP_N 6.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3814 K09338 - pop:18105041 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g3814 06 38099871 38101911 Aev06g3814 06 38099871 38101911 ECH
Aev02g0058 02 348280 351300 Aev06g3814 06 38099871 38101911 PCT