Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3800 ATGATGAAGGTTGAGAAGTACTTATTAGTGGTGTTGGTAGCACTTGGCATAACAATTCCATGCATTGAGGGTGGAATTGGTGAGTTTGATGACTATTTGAAAGCACAAGCTGAGGTTGCCCATGAAATTGCCCTCAACTCCTTCGTTCCTGATCCTATCAATGTCACATCCGATCTCAACGCCCGCGTTAACATAGCAATGGAGGAAGAATCAAACAGCACAAGGAGGAGCCTGAGGCAGCGAGGAAGAGGATACACTGGACCATGCATGGCCACCAACCCTATTGACCGTTGCTGGAGGTGCAGAGCCGATTGGGCCCAAAACCGCCAATTATTGGCCCATTGCGGCAAAGGATTCGGAAGAAGGGCCACCGGAGGACTCGGCGGCCCAATATATACAGTCACCGATGAGTCTGATCACGACTTGATTAACCCTAAACCCGGAACCCTAAGGTACGGTGTGGTCCAAAAGGGACCGCTATGGATCATATTCGCACGTAGCATGGTGATTAGATTGCAACAAGAATTGTTGGTGTCGTCAGACAAGACGATTGATGGTCGAGGTGCCCAAGTCCAGATTCAGGATGGTGGTGGCATCACATTGCAATTCGTGAACAATGTGATCCTTCATGGGCTCCGCATAAAGAAGATACAGTCATTGGGAGGTGGCATGATTAGGGACTCTTACAACCATGTTGGTTTCAGGACTAGGAGTGATGGTGATGCAATCTCCGTCTTCGGATCATCCAACATTTGGATTGATCATATTTCTTTGTCTGAGAGCGCTGATGGCCTCATCGATGTCATTGAAGGTTCCACTGCAATCACCATCTCTAATTGCCACATGACCAAGCATAACGATGTGATGTTGTTTGGAGCAAGTGATTCGTACTCAGGAGACAAGATCATGCAGATCACAGTGGCATTCAACCATTTTGGGCAAGGGTTGATACAGAGGATGCCAAGATGCAGATGGGGATTCTTCCATGTGCTGAACAATGACTACACTCACTGGCTCATGTATGCCATTGGAGGCAGCTCAGGCCCAACAATTCTTAGCCAAGGAAACCGATTCATCGCGCCAAACAATAATGCAGCAAAAGAAATCACACACAGAGATTACACAACACCAGCTCAATGGTCTAAGTGGCAATGGACCTCAGATAATGACCTTTACATGAATGGTGCGAAGTTTGTTACTTCTGGTGCACCTATTGGTAACAACCTAGCCATTAACAAAGGGTACCTTATGAAGCCAAGGCCTGGATCTCAAGCCAATAGGTTAACCAGGTTTGCAGGTGCCCTTGGTTGCAGGGTAGGCAAACCTTGCTAG 1332 0.4745 MMKVEKYLLVVLVALGITIPCIEGGIGEFDDYLKAQAEVAHEIALNSFVPDPINVTSDLNARVNIAMEEESNSTRRSLRQRGRGYTGPCMATNPIDRCWRCRADWAQNRQLLAHCGKGFGRRATGGLGGPIYTVTDESDHDLINPKPGTLRYGVVQKGPLWIIFARSMVIRLQQELLVSSDKTIDGRGAQVQIQDGGGITLQFVNNVILHGLRIKKIQSLGGGMIRDSYNHVGFRTRSDGDAISVFGSSNIWIDHISLSESADGLIDVIEGSTAITISNCHMTKHNDVMLFGASDSYSGDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNNAAKEITHRDYTTPAQWSKWQWTSDNDLYMNGAKFVTSGAPIGNNLAINKGYLMKPRPGSQANRLTRFAGALGCRVGKPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3800 443 SUPERFAMILY Pectin lyase-like 93 434 IPR011050 -
Aev06g3800 443 Gene3D - 92 436 IPR012334 -
Aev06g3800 443 Pfam Pectate lyase 175 358 IPR002022 -
Aev06g3800 443 Pfam Pectate lyase, N terminus 26 78 IPR007524 GO:0030570
Aev06g3800 443 SMART amb_all 167 364 IPR002022 -
Aev06g3800 443 PANTHER PECTATE LYASE 18-RELATED 5 443 IPR045032 GO:0030570
Aev06g3800 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Aev06g3800 443 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Aev06g3800 443 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Aev06g3800 443 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Aev06g3800 443 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Aev06g3800 443 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Aev06g3800 443 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Aev06g3800 443 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Aev06g3800 443 PANTHER PECTATE LYASE 5 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3800 Aev-Chr6 38019936 38022305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3800 7 443 Polysaccharide Lyase AT1G14420 55.165 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3800 K01728 - gmx:100780236 678.707