Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3554 ATGGCATTCATTCCACAACCCCAAGAACAAGACCCCGAAGAATCCGAAGAAATTGCCGTCGCTGTTACACCCACAGCAACAGCGACGATAACAGAAGAAGACACAAGCATCGATGTTCACACCGCGGGGGGTGCACCGGTACGCTACCTCCCGCTGGATCACCTATACTCCTCTACCTCACCCTGTAGCGGCTCCTCCAATGTCATGTCGAAGAAAGTTAAAGCAGCTCGAAAACTCCCTCATCACTTCCACCAAAACGACGACGTCGTTCTCTTCAACAACACCAAAATGGCGATGACTAATCATGTTCCTGTTTCCAGTAACAATAATAAGCCGCCGGTTCTTTTTGTGTACTCTCGGCGGCGGAAGAGGGGTCGGTTTTGCAAGCCTACGACGTCGTTTTATGATTCGGTTTTGGGCCGGTTTGGGAAGGAGTTGAAGGGAGAAGGTTCGGGTTCGGAGAGGTTGGTGAAGAGGAGGAGGATTGGGACAACTGAATTGGAGAAATTGGGGGTGGATTTGGGTGCATTGGGAGGTTTTGAAGGGCCTAGGTTTAGGGAATGCCGCAATAATCATGTTAATGGGGAGAGAAAAGCTGCTGCTGCTGCTGGTTCTTCGGGGAAGTTAACTCAGTCGGTACCTGAATCTCGCACAGTGAAGAGATGGGTTGGGTTGAATTTTGATAATGTTGACCCTGAGGTGTTCGTTGGATTACGATGCAAGGTGTATTGGCCGATGGATGTAAAATGGTATTCTGGCTGTATCAAAGGTTATGATATGGAAACTAAGATACACCATGTTGAGTATGATGATGGTGATGCAGAAAATTTGATTCTTTCAAAGGAAAATGTAAAATTCCACGTTTCCCGGGAGGAGATGAAGCGTTTAAATTTGAGTTATGCCAAAGGTCGTGACTGTAATGTCTATGAGTATGATGTTGATGAGATGCTTGCAATGGCTGCGAGTTTGGGTGATTGTCAAAACTTTGAACCTGGAGATATCGTATGGGCCAAGCTAACAGGTCATGCAATGTGGCCAGCTGTTGTTCTGGACGAATCACTTGCCAGCAAGTGTAAGGGATTGAAGACACTTTTAGGAGGAAATTCGGTTCCAGTCCAGTTTTTCGGCACCCATGACTTTGCAAGGGTTAGAATGCAGCAGGTGAAATCATTTCTAAATGGACTTCTTACTGAACTGCATGCGAAGTGCAACAAAATTAGTTTCTTTGAAGGTTTGGAAGAGGCAAAAAGGTATTTAAATGAACATAAGCTTCCTTCAGAGATGCTAGAGTTGCAGAAAGGATGTATAGCTGATGACTGTAATAATGTAACTGGAGAGGATGGAGGATGTACAGACTCAGGTGAAGATTGTTTGAGTGACAAAGAGACAACAGCAAACATTGAATCTTTTCCTTGTGAAGTAGGCGACTTAAAAATTATATGCCTAGGAAAAATAGTTGAAGATTCTGCATATTTCCAAGATGGAAGATCCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCAGTCACTGACCCTAAAGTATCTGCTGAGTATAAGATGGAGGTCCTGAGGGATCCAGAATCCAAAGTGCGACCTCTTTTTAGAGTGACAATTGATGGTGGTGAGCAGTTCAATGGTTATACACCATCTGCTTGCTGGGACCAAATATCCAAAAGGATAAATGAAACAGGAAGGGATGCTTCTGAAGTTTCTGTTGCAGAAGGTGGGGTGGAAACAGGCAATGAGTCTGGGTCTCATATGTTTGGTTTCTCCAATCCTAAAGTGGCTAAACTTATACAGAGATTATCTAAATCCAAAGTTTCTTCCAAGAATTCAAGTTGCAAGTTAGGTTCCAGAAGATATAATGACCTGCCGGTTGGTTATAGGCAGGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGACGAGGAGTACGAGAACAATCTGTTTCTGCAATGTGACAAGTGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTAAATGGAGTGCTATGGTTGTGCAAATTATGTCGTTCGGGTGCTCCTCCCCCACCCTGTTGCTTATGTCCATTAATAGGAGGTGCGATGAAGCCTACAACAGATGGTCGTTGGGCTCATTTGGCTTGTGCTATGTGGATTCCTGAGACTTGCTTAGCTGATGTCAAGAAAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGTAGTATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAGTTCTTGCCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTGGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCTGTTGATGACGATGAAGATCAGTGCATCCGCCTCCTTTCTTTTTGCAAGAAACATAGGCAACCATCTAATGAACCTTCTGTTGCCAATGAGCGAATCGTTCAAGCTGCTGGTCAATGTTCTGAGTATGATCCACCACCCAACCCATCCGGGTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGCCGGAAAGAGCCTGAAGTACTTGCGGCTGCATCGTTGAAACGTTTGTTTGTTGAGAACCAACCTTCTTTAGTAGGTGGATACTGCCAGCATGGGTTCTCAAATGACCCAGAGCCTTCTGGTAGGGGAATCTGTTCCCAAGTACAAAGGCTGAGAAACTATATGGTTGACGATTCAGATGACGTACTTTCTATTGGTGAGAAATATAAGTGCATGAGGAAAACCTTCCGGAAACGGCTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATTTTTGCAAAGTATTCATATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTCCCATAGCTGACCGGAGAGAGCGTTTTATATACAATTCCTTGGTGGGTGCTGGAACATATATGTTTCGAATTGATGATGAACGAGTCATTGATGCCACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTTATAAGTATCCATGGCGATGAGCACATTATAATATATGCAAAGAGGGACATTAAACAATGGGAGGAACTTACATATGATTATAGATTTTTCTCAATTGGTGAACGGCTTGCTTGTTACTGTGGCTTCCCAAAATGCCGAGGTATAGTAAATGATACCGAGGCAGAAGAGCGAGCTGCTACATTGTATGCACCTCAAAGCGAGTTAGTAGATTGGAGAGATTATTAG 3318 0.4397 MAFIPQPQEQDPEESEEIAVAVTPTATATITEEDTSIDVHTAGGAPVRYLPLDHLYSSTSPCSGSSNVMSKKVKAARKLPHHFHQNDDVVLFNNTKMAMTNHVPVSSNNNKPPVLFVYSRRRKRGRFCKPTTSFYDSVLGRFGKELKGEGSGSERLVKRRRIGTTELEKLGVDLGALGGFEGPRFRECRNNHVNGERKAAAAAGSSGKLTQSVPESRTVKRWVGLNFDNVDPEVFVGLRCKVYWPMDVKWYSGCIKGYDMETKIHHVEYDDGDAENLILSKENVKFHVSREEMKRLNLSYAKGRDCNVYEYDVDEMLAMAASLGDCQNFEPGDIVWAKLTGHAMWPAVVLDESLASKCKGLKTLLGGNSVPVQFFGTHDFARVRMQQVKSFLNGLLTELHAKCNKISFFEGLEEAKRYLNEHKLPSEMLELQKGCIADDCNNVTGEDGGCTDSGEDCLSDKETTANIESFPCEVGDLKIICLGKIVEDSAYFQDGRSIWPEGYTAVRKFTSVTDPKVSAEYKMEVLRDPESKVRPLFRVTIDGGEQFNGYTPSACWDQISKRINETGRDASEVSVAEGGVETGNESGSHMFGFSNPKVAKLIQRLSKSKVSSKNSSCKLGSRRYNDLPVGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCKLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKKMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEPSVANERIVQAAGQCSEYDPPPNPSGCARSEPYDYFGRRGRKEPEVLAAASLKRLFVENQPSLVGGYCQHGFSNDPEPSGRGICSQVQRLRNYMVDDSDDVLSIGEKYKCMRKTFRKRLAFGKSRIHGFGIFAKYSYKGGDMVIEYTGELVRPPIADRRERFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISIHGDEHIIIYAKRDIKQWEELTYDYRFFSIGERLACYCGFPKCRGIVNDTEAEERAATLYAPQSELVDWRDY* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3554 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 821 IPR013083 -
Aev06g3554 1105 ProSiteProfiles SET domain profile. 941 1059 IPR001214 GO:0005515
Aev06g3554 1105 ProSiteProfiles Post-SET domain profile. 1065 1081 IPR003616 -
Aev06g3554 1105 ProSiteProfiles FYR domain FYRC motif profile. 532 618 IPR003889 GO:0005634
Aev06g3554 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 692 IPR013083 -
Aev06g3554 1105 ProSiteProfiles Extended PHD (ePHD) domain profile. 695 819 IPR034732 -
Aev06g3554 1105 SMART fyrn_3 484 528 IPR003888 GO:0005634
Aev06g3554 1105 Gene3D - 319 428 - -
Aev06g3554 1105 CDD PHD_ATX1_2_like 643 689 IPR042010 -
Aev06g3554 1105 SUPERFAMILY FYVE/PHD zinc finger 636 705 IPR011011 -
Aev06g3554 1105 Gene3D SET domain 897 1094 IPR046341 -
Aev06g3554 1105 ProSiteProfiles PWWP domain profile. 331 394 IPR000313 -
Aev06g3554 1105 CDD SET_SETD1-like 930 1077 - -
Aev06g3554 1105 Pfam PWWP domain 332 419 IPR000313 -
Aev06g3554 1105 SUPERFAMILY Tudor/PWWP/MBT 325 425 - -
Aev06g3554 1105 SUPERFAMILY Tudor/PWWP/MBT 234 276 - -
Aev06g3554 1105 Pfam F/Y-rich N-terminus 475 525 IPR003888 GO:0005634
Aev06g3554 1105 CDD ePHD_ATX1_2_like 704 818 IPR041956 -
Aev06g3554 1105 SMART fyrc_3 536 630 IPR003889 GO:0005634
Aev06g3554 1105 ProSiteProfiles FYR domain FYRN motif profile. 469 528 IPR003888 GO:0005634
Aev06g3554 1105 SMART PHD_3 753 819 IPR001965 -
Aev06g3554 1105 SMART PHD_3 643 690 IPR001965 -
Aev06g3554 1105 SUPERFAMILY SET domain 934 1078 IPR046341 -
Aev06g3554 1105 SMART set_7 941 1065 IPR001214 GO:0005515
Aev06g3554 1105 Pfam PHD-finger 656 690 - -
Aev06g3554 1105 ProSiteProfiles Zinc finger PHD-type profile. 641 692 IPR019787 -
Aev06g3554 1105 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 29 1103 - -
Aev06g3554 1105 PANTHER PHD FINGER PROTEINS 29 1103 - -
Aev06g3554 1105 SMART PWWP_4 329 392 IPR000313 -
Aev06g3554 1105 ProSitePatterns Zinc finger PHD-type signature. 644 689 IPR019786 -
Aev06g3554 1105 Pfam SET domain 952 1058 IPR001214 GO:0005515
Aev06g3554 1105 Pfam PHD-zinc-finger like domain 697 818 - -
Aev06g3554 1105 Gene3D - 230 282 - -
Aev06g3554 1105 Pfam F/Y rich C-terminus 534 609 IPR003889 GO:0005634
Aev06g3554 1105 Gene3D - 470 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3554 Aev-Chr6 36365260 36375578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3554 644 789 C2H2 Transcription Factor Family AT3G14740 39.735 2.98e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aev06g3554 zf-HC5HC2H_2 5e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3554 - - gmx:100808923 1697.95