Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3516 ATGACGAATTACTTAATGTTACTCTCTAGAGGGGGTGATTTTGAGGCTACATACACAAGTGTCTCCCATGATAATTATTCCAACCGTGTGTTTGAGTGCAAGACATGTAATAGGCAATTCCCTTCATTTCAAGCACTTGGAGGCCATAGGGCTAGTCACAAGAAGCCAAGGTTGATGTTAGGAGATGATATTCATGGTGGAGAAAACAACAACAATAACAACATGATGGATTCTCAAGTATTGGTTTCTTCACCACAAAAGCCCAAAACTCATGAATGTTCAATTTGTGGGTTAGAATTTGCAATTGGGCAAGCCTTAGGTGGCCACATGAGGAGGCATAGAGCTGAGAATTTGAATGGTGGGAAGTTGAATAGCAAAAATAATAATTATACTACTATGAGTCATAGTAGTAGTAGTGGTGGTAATAATAGTAGTAGTGTTGATTCTTCATCAAAAAAGGGTGTGAAAGTTGCAAGGAACAAGAGGGTTTTGGTTTTGGATTTGAATTTGACACCATTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGGCAACTACGTTGGTTGATTATTTGTGA 579 0.38 MTNYLMLLSRGGDFEATYTSVSHDNYSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMLGDDIHGGENNNNNNMMDSQVLVSSPQKPKTHECSICGLEFAIGQALGGHMRRHRAENLNGGKLNSKNNNYTTMSHSSSSGGNNSSSVDSSSKKGVKVARNKRVLVLDLNLTPFENDLEFLKIGKATTLVDYL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3516 192 Gene3D Classic Zinc Finger 28 113 - -
Aev06g3516 192 SUPERFAMILY beta-beta-alpha zinc fingers 29 113 IPR036236 -
Aev06g3516 192 MobiDBLite consensus disorder prediction 120 153 - -
Aev06g3516 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Aev06g3516 192 Pfam C2H2-type zinc finger 30 56 - -
Aev06g3516 192 Pfam C2H2-type zinc finger 91 116 - -
Aev06g3516 192 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Aev06g3516 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Aev06g3516 192 SMART c2h2final6 31 53 IPR013087 -
Aev06g3516 192 SMART c2h2final6 91 113 IPR013087 -
Aev06g3516 192 PANTHER ZINC FINGER PROTEIN ZAT12 1 180 - -
Aev06g3516 192 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Aev06g3516 192 PANTHER ZINC FINGER PROTEIN ZAT5 1 180 - -
Aev06g3516 192 MobiDBLite consensus disorder prediction 117 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3516 Aev-Chr6 36097295 36097873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3516 1 184 C2H2 Transcription Factor Family AT2G28710 41.489 1.17e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev06g3516 zf-C2H2_6 5.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3516 - - gmx:100781134 215.698