Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3456 ATGGATTTCAATAGGAATTCAGTGCCTTCTCTCCCTGTGGTTCAGTACGATCATGAAGAAGCTTGGCAGATTATGATATTTTGGACTAGGCAGATATTTATTATTGAAAATGCTGAAGAGTTCAAGAAGCAGCTGCAACTGCCTTTGGCTAGGGTCAAAAGGATCATGAAATCCGAAGGCCAGGCAGAGATGGTGAGTGCTGAAGCCCCAAAACTGATGTCAAAGGCTTGTGAGTTCTTCATTCAGAAGCTTGCAATCTTTTGCTGGATTTGTGCTCTAAGGTCTCATAGGCACATCATTGAGCGATCTGACATTGCCACAACCATTGTGGGACATCTTGAGCTTGATTTTCTTGCTGAGGTTCTTCCTCCTGCACTCATTCAACCCCATCTTCAGGCTGCCCAAGAGGCAAGAAATGCTGGTCTTGGAGGAAATCAAGGTGATGCCCTGTCTTTTGGAAGTACTTTAATGGGGCATGCTATGATGAACAATGCTGGAAATCAGGAAAGAAGTTTTATGACTAGTGCTGCTGAGAACCAGGTTGCTCTGCCTTTTGATCCTAGTTTCATGGGTTATCCTATGATGAATGTAGGCACTGGAGCTAATGTTGCTGGTGGAGGAAACCTAACTCCCATGCTTTATGATGCTAATTTTATGGGAAATCCAATGCTGGATACTGGAAATCAGGGATTTGGGGATGCTATGAACAACTTTGCTGGAAACCAAGCTCCTATCCCTTATGTTGGAGGTTTCATGGAAATTCCTACAACGATTACTGGCTCTGAAGAAAACTTTGCTAACCTTGCTGCTGGAAGCCAACCTGCTCTGTCTTATACTGGTGCTGATTTCATGGGAAATCCTATGTTCAATAATGAGGAAGCTGGGAATGATCTCAACATTATGGGAGGAAACCAAGTTTCTGTTCCTAACAATGCTGCTTTCATGGGAACTCCCATGATGAATATGGGCTATGACAATGTGGGAAGTAGCCACCAGCTTCCTCAATCCTCCAACATGATGGAGCCAACTATTATGCCTTCTGATAACTTGCCCCACAATTATCATCTCAAGATTGACTCTGAATGGGAAGCCGCTTAG 1098 0.4381 MDFNRNSVPSLPVVQYDHEEAWQIMIFWTRQIFIIENAEEFKKQLQLPLARVKRIMKSEGQAEMVSAEAPKLMSKACEFFIQKLAIFCWICALRSHRHIIERSDIATTIVGHLELDFLAEVLPPALIQPHLQAAQEARNAGLGGNQGDALSFGSTLMGHAMMNNAGNQERSFMTSAAENQVALPFDPSFMGYPMMNVGTGANVAGGGNLTPMLYDANFMGNPMLDTGNQGFGDAMNNFAGNQAPIPYVGGFMEIPTTITGSEENFANLAAGSQPALSYTGADFMGNPMFNNEEAGNDLNIMGGNQVSVPNNAAFMGTPMMNMGYDNVGSSHQLPQSSNMMEPTIMPSDNLPHNYHLKIDSEWEAA* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3456 365 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 107 IPR003958 -
Aev06g3456 365 Gene3D Histone, subunit A 13 123 IPR009072 GO:0046982
Aev06g3456 365 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 165 - -
Aev06g3456 365 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 19 165 IPR027170 GO:0003700|GO:0006355|GO:0016602
Aev06g3456 365 SUPERFAMILY Histone-fold 43 127 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3456 Aev-Chr6 35594734 35599140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3456 26 159 CCAAT-HAP5 Transcription Factor Family AT5G63470 37.313 2.08e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aev06g3456 CBFD_NFYB_HMF 3.2e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3456 - K08066 lcq:111680203 97.0561