LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev06g3303	ATGGAATTTCTTCATCACTACCTTCACATTCTCTCATCAATATTCATTCTTCTCTTATGCTTTTTACCTCAATTACTTCATAGTCAACAAGTGTACCTAAATGGAACTGTCTATGATTGCACAGATACCCCTTCTACACCAAAAGGGTATCTCTGCAATGGCCCTCAAAAGTCCTCATCATGCACTACTTTCTTGGTTTTCAGGTCAAAATCCCCTTATGACAACCCTACTACAATTGCATACTTACTTGGTTCTGAAGCATCAACAATAGCCTCAATCAACAAAGTCTCAAACAATGGAAAAATTCCTCACAACAAACCAATCATTGTGCCTGTGTTCTGTTCTTGCTATGGAAATATCTATAGGCATGATGCTCCTTACACTGTGAGACAAAATGACACATACTATGAATTGGTGAAAACAATTTACCAAGGCTTAACAACATGTCAAGCATTGATGGGGCAGAATTATTATGCACCTGATGATATTGCAGTTGGTGCTGAACTCACAGTTCCTGTGCTTTGTGCTTGTCCAACAAGAAACCAAACTTCAAAAGGTGTCACATCTTTGCTTGTTTACTTGGTGAATTATGGTGACACTGTTAAGTCCATTGGTGAGGCTTATGGGGTTGATGAGCAAAGTATGATGGAGGCAAATGGGTTGAAAGAGACATCAAGTGGTCAAAATAGAAGCATGAATCTCTTAGCTTTGACACCTATCATAGTTCCTCTTAAAGGGAAGAGTTGCAAGGAGAATCCAGATAGTTTCTATTGTAACTGTTCCAATGGACTTCTTGGAGATGGAGGATCTCAGGGGATTTACTGTGATGAACCTGGTGGTCAGAAGTTTCCTGCAAAATTGGTTGCTTCAGTTGGTGTTGGCATTGGTGCAGGCCTTCTGTGTTTGTTTCTTCTAGGTTATAAGCTATATCAATGCATACAGAAAAGGAGAGGAAAAATTCGCAAGGAAAAGCTGTTCAAGCAAAATGGCGGCTACCTGCTACTAGAGAAAGTCTCATCTTATGCAAATGGACAGAAGACAAAGCTTTTCACAGCTGAAGAGATGAAAAGAGCAACAGATAACTACAACCAGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCATGGTCTATAAAGGAATGTTACCGGATGGAACCATAGTAGCAGTGAAAAAGTCGAAAGAAGTCGAACGGAACCAGATACATACTTTTGTCAATGAAGTTGTCATTCTATCACAGATTAATCACAGGAACATTGTGAAACTATTGGGATGTTGTCTCGAGACGGAAGCTCCATTACTAGTCTACGAATTCATTCCCAATGGAACACTTTCTAACCATATTCATGGAAAAGAGAAAGAGGCATCGCTTTCATGGGACAGACGACTTCGGATTGCATCCGAGGTTGCCGGAGCAGTAGCATATATGCATTCTGCAGCTTCTGTTCCTATCTTCCACAGAGACATCAAGCCTTCTAATATACTCTTGGACAAAGATGAGGGTGAGAACCTCATTGCAGAGTTCATTTCAGTGATGAAGGAGAACCAGCTTTCTGATATCATAGATGCCAGAGTGGTTAAGGAAGCAAGAAATGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCATCAATGAAAGAGGTTTCAGCAGAGCTAGAAGCATTGAGAATGGTTCAGAGTTCGTTACAGATTAACCATGATCGCGAGTCACCAAATGACAGTATATCACTTATCCGCACCACCATTGAAACAGTTCATGAATTTGAAGAGGAAAGCTTTATGCTATCCGAACAAACAGAGTCTACATTCTTCTAG	1842	0.4045	MEFLHHYLHILSSIFILLLCFLPQLLHSQQVYLNGTVYDCTDTPSTPKGYLCNGPQKSSSCTTFLVFRSKSPYDNPTTIAYLLGSEASTIASINKVSNNGKIPHNKPIIVPVFCSCYGNIYRHDAPYTVRQNDTYYELVKTIYQGLTTCQALMGQNYYAPDDIAVGAELTVPVLCACPTRNQTSKGVTSLLVYLVNYGDTVKSIGEAYGVDEQSMMEANGLKETSSGQNRSMNLLALTPIIVPLKGKSCKENPDSFYCNCSNGLLGDGGSQGIYCDEPGGQKFPAKLVASVGVGIGAGLLCLFLLGYKLYQCIQKRRGKIRKEKLFKQNGGYLLLEKVSSYANGQKTKLFTAEEMKRATDNYNQSRFLGQGGYGMVYKGMLPDGTIVAVKKSKEVERNQIHTFVNEVVILSQINHRNIVKLLGCCLETEAPLLVYEFIPNGTLSNHIHGKEKEASLSWDRRLRIASEVAGAVAYMHSAASVPIFHRDIKPSNILLDKDEGENLIAEFISVMKENQLSDIIDARVVKEARNDDILAIANLAMRCLRLNGKKRPSMKEVSAELEALRMVQSSLQINHDRESPNDSISLIRTTIETVHEFEEESFMLSEQTESTFF*	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev06g3303	613	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	497	594	IPR045274	GO:0007166
	Aev06g3303	613	Pfam	Protein kinase domain	362	500	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aev06g3303	613	Pfam	LysM domain	127	172	IPR018392	-
	Aev06g3303	613	Pfam	LysM domain	193	224	IPR018392	-
	Aev06g3303	613	PANTHER	LYSM TYPE RECEPTOR KINASE	497	594	-	-
	Aev06g3303	613	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	29	497	IPR045274	GO:0007166
	Aev06g3303	613	CDD	LysM	192	222	IPR018392	-
	Aev06g3303	613	SMART	LysM_2	192	243	IPR018392	-
	Aev06g3303	613	SMART	LysM_2	126	172	IPR018392	-
	Aev06g3303	613	PANTHER	LYSM TYPE RECEPTOR KINASE	29	497	-	-
	Aev06g3303	613	Gene3D	Transferase(Phosphotransferase) domain 1	438	504	-	-
	Aev06g3303	613	Gene3D	Transferase(Phosphotransferase) domain 1	505	574	-	-
	Aev06g3303	613	ProSitePatterns	Protein kinases ATP-binding region signature.	368	391	IPR017441	GO:0005524
	Aev06g3303	613	Gene3D	Phosphorylase Kinase; domain 1	335	437	-	-
	Aev06g3303	613	ProSiteProfiles	Protein kinase domain profile.	362	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aev06g3303	613	SUPERFAMILY	Protein kinase-like (PK-like)	347	561	IPR011009	-
	Aev06g3303	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	483	495	IPR008271	GO:0004672\|GO:0006468
	Aev06g3303	613	SMART	serkin_6	362	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev06g3303	Aev-Chr6	34387473	34393367	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev06g3303	247	566	Receptor kinase-like Gene Family	AT1G21250	39.141	9.93e-77	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Aev06g3303		Pkinase	7e-29	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev06g3303	-		-	gmx:100795455	724.161