Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3228 ATGAACAATAGAGCGAGGTACCCACCTGGGATCGGATTAGGGCGCGGAAATGGTGGTGGTGGTGGTTATAACAACCAAGGGTTTCAACCAAGGCCACATCAGCAACAGTATGTGCAGAGGCACATGGTTCAGCAGCAACATCAGCACCCTCAGCAGTATCAGCAACATCATCATCAGCAAAATCAACAGCATCATCAACAACAGCAGCAGCATCAGCATCAGCATCAGCAGCAACAACAACAGTGGTTGAGAAGGACACAGTTGGGTGGTAGTAGTGGTGCAACTGACAACAACGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCTGTGGACTCGAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCACAAGATACACGCTACAAGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCAATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGCAGTGACATTCTAGCCAGAGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATACTGGTACCAACACGAGAATTAGCTTTGCAGACATCTCAAGTGTGTAAAGAACTTGGAAAGCATTTGAAAATTCAGGTTATGGTCACAACAGGCGGTACCAGCCTTAAGGATGATATTATGCGTTTATATCAACCAGTTCATTTACTGGTTGGAACTCCAGGAAGAATTTTAGATCTTGCAAAGAAGGGTGTTTGTGTTCTGAAGGATTGCTCTATGCTAGTTATGGACGAGGCTGATAAGCTTCTATCCCCAGAATTCCAACCTTCCATAGAGCAGTTGATTCAGTTTCTTCCTCCAAACCGTCAAATCCTGATGTTTTCGGCAACATACCCTGTTACTGTAAAGGATTTCAAAGATAGATATCTTCGTAAGCCATATGTCATTAACCTTATGGATGAGTTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACGCTTTTCTCTAAGTTGCAAATAAACCAGTCAATCATCTTCTGCAACTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGCTATTCTTGTTTCTATATTCATGCAAAAATGTTGCAAGATCACCGTAATAGAGTGTTTCATGATTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACCGATCTTTTCACTAGGGGTATAGACATCCAAGCAGTTAATGTTGTTATTAACTTCGATTTTCCCAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTCAACCTGATTACATATGAAGACCGCTTCAATTTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCCCCACACATTGATCAGGCAATATATTGCCGGTGA 1554 0.4163 MNNRARYPPGIGLGRGNGGGGGYNNQGFQPRPHQQQYVQRHMVQQQHQHPQQYQQHHHQQNQQHHQQQQQHQHQHQQQQQQWLRRTQLGGSSGATDNNVVEEVEKTVQSEAVDSSSQDWKARLKIPPQDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPNRQILMFSATYPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3228 517 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 290 298 IPR000629 -
Aev06g3228 517 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 4 517 - -
Aev06g3228 517 Pfam Helicase conserved C-terminal domain 369 475 IPR001650 -
Aev06g3228 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 344 IPR014001 -
Aev06g3228 517 SMART helicmild6 394 475 IPR001650 -
Aev06g3228 517 MobiDBLite consensus disorder prediction 1 83 - -
Aev06g3228 517 Gene3D - 94 346 IPR027417 -
Aev06g3228 517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 514 IPR001650 -
Aev06g3228 517 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 4 517 - -
Aev06g3228 517 Pfam DEAD/DEAH box helicase 168 332 IPR011545 GO:0003676|GO:0005524
Aev06g3228 517 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Aev06g3228 517 CDD SF2_C_DEAD 355 484 - -
Aev06g3228 517 MobiDBLite consensus disorder prediction 22 83 - -
Aev06g3228 517 CDD DEADc_DDX6 145 345 - -
Aev06g3228 517 SMART ultradead3 162 358 IPR014001 -
Aev06g3228 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 497 IPR027417 -
Aev06g3228 517 Gene3D - 348 517 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3228 Aev-Chr6 33695107 33699587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3228 143 514 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 1.37e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3228 K12614 - tcc:18614173 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g3228 06 33695107 33699587 Aev06g3228 06 33695107 33699587 ECH