Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3224 ATGTCATTCACAGGAACTTTGGATAAATGCAAGGCTTGTGATAAAACTGTGTATGTGGTTGATTTGTTAACTCTTGAAGGAATACCTTATCATAAAAACTGCTTCAGATGCAGTCATTGCAAGGGAAATCTCACTATGGGGACATACTCCTCAATGGATGGTGTCCTTTATTGCAAGCCACACTTTGAACAGCTGTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCCAAACAGCCAAGCCTTCTGATAGACAGAATGACATTAATAGGACTCCAAGCAGACTCTCTTCCATGTTCAGTGGAACTCTAGACAAATGTGCAGTTTGTGAAAAAACAGTCTATCCACTTGAAAAGATGTCACTGGAAGGAGAATGCTACCACAAGAGCTGCTTTAGGTGTGCTCATGCAGGTTGCCATCTCACACATTCCTCCTATGCTGCATTGGATGGTGTCCTCTACTGCAAGCACCATTTCCAACAGCTTTTCATGGAGAAAGGTAACTACAACCATGTCCTCCAGGCTGCTCAAAACAGGAAGAATGTTACTCCACCCCCTGAATTGGCTGATGCGCCGCCCGCCGAAGAAGAAGAGCCACCAAAGCCAGAGGACCCTGAGGATAAAACAGAACCTCAACCAGAAGAAGAAGAAGCTGAGACAGAGGCTAAGACAGAAGAAGAAAAATCTTGA 687 0.441 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFRCSHCKGNLTMGTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKPSDRQNDINRTPSRLSSMFSGTLDKCAVCEKTVYPLEKMSLEGECYHKSCFRCAHAGCHLTHSSYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAQNRKNVTPPPELADAPPAEEEEPPKPEDPEDKTEPQPEEEEAETEAKTEEEKS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3224 228 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aev06g3224 228 SMART lim_4 9 61 IPR001781 -
Aev06g3224 228 SMART lim_4 105 157 IPR001781 -
Aev06g3224 228 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Aev06g3224 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Aev06g3224 228 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Aev06g3224 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Aev06g3224 228 Pfam LIM domain 10 65 IPR001781 -
Aev06g3224 228 Pfam LIM domain 106 161 IPR001781 -
Aev06g3224 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Aev06g3224 228 MobiDBLite consensus disorder prediction 178 228 - -
Aev06g3224 228 Gene3D Cysteine Rich Protein 6 74 - -
Aev06g3224 228 Gene3D Cysteine Rich Protein 102 170 - -
Aev06g3224 228 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Aev06g3224 228 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Aev06g3224 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Aev06g3224 228 MobiDBLite consensus disorder prediction 193 207 - -
Aev06g3224 228 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3224 Aev-Chr6 33673034 33675713 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aev06g3224 LIM 5.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3224 - K09377 gmx:100779513 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g3224 06 33673034 33675713 Aev06g3224 06 33673034 33675713 ECH
Aev06g3224 06 33673034 33675713 Aev02g0319 02 2365324 2367607 PCT