Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3198 ATGGCAGAAGCTGAAGCTAGGAACAAACATGATTCTCCTACAATTGTTACAAATGGTTCTAATTCTTCAAACAACAACATAGGTCAATCAAACAAACCAACCATGATGAAAAGGTTCATTGGGGTGAGGCAAAGGCCATCAGGGAGGTGGGTGGCAGAGATCAAGGACTCATCTCAACATGTAAGGCTATGGCTCGGTACCTACGACACGCCGGAGGAAGCCGCGAGGGCCTACGACGAAGCGGCTAGAGCGCTACGCGGCGAAAATGCAAGAACAAACTTTGTAGCAACAGGGCAATTACAAGTTGAAGCAGGGTCATCACCACTTTCCAATGAAAAGCATAATGGATTGAGTTTTGCTTCATTGAAGGCAAAATTGAGCAAGAATTTGCAAAGCATAATTGCAAGGGCTAATAGTGATAATCATCACAACAAATCATCATCATCTAAGAGTAGGGTGAGTGATCATTTCACATTTGCTAGCATATTCCATAGAAATAATAGGAGCAATAATTACAATTACAATCAAAATAATAGTAATATTAATAAAAATAATGGTCCTATGGTTGATGTTAAGAGAATTGAGAAAGTGGTTCAACCTAGCATCATAGTCCCACCAAATCATGTGGTTGAATATTCAAAGCCTAATAATAATAATTGTACTACTTCTTGGGAAACATCTAGTGTATCTGATTGTAGCAATGAGTGGAATAATACTAATGGGCTTGTAAGGCCCAATAGATTATTTGACTCATCATCATTAGGTTCATCATGCTCTGATGGGTCAGAATTTGGGGATTATTTTGGTGTTGGTGATCAAGGGAATTTGGACCAATTGATGGGGTGGGTTGATATTGATGGTGGAAATAATGAGGGATCAAGGAGCAAGAGGTTTAAGGTATCTTCTTCAGTGCTTGTGCCTCCAAGTTTCATTGCTTCACCATATGATTGTGGTTCTCCATATAGTGGTTGTGGATCTCCTTATAATAATTTTTATGGCTCTCCTTATAATGGTTATGGATCTCAATATAATGGTGGGAAGTGA 1044 0.3918 MAEAEARNKHDSPTIVTNGSNSSNNNIGQSNKPTMMKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFVATGQLQVEAGSSPLSNEKHNGLSFASLKAKLSKNLQSIIARANSDNHHNKSSSSKSRVSDHFTFASIFHRNNRSNNYNYNQNNSNINKNNGPMVDVKRIEKVVQPSIIVPPNHVVEYSKPNNNNCTTSWETSSVSDCSNEWNNTNGLVRPNRLFDSSSLGSSCSDGSEFGDYFGVGDQGNLDQLMGWVDIDGGNNEGSRSKRFKVSSSVLVPPSFIASPYDCGSPYSGCGSPYNNFYGSPYNGYGSQYNGGK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3198 347 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Aev06g3198 347 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Aev06g3198 347 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 289 - -
Aev06g3198 347 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Aev06g3198 347 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Aev06g3198 347 MobiDBLite consensus disorder prediction 1 32 - -
Aev06g3198 347 CDD AP2 37 94 IPR001471 GO:0003700|GO:0006355
Aev06g3198 347 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Aev06g3198 347 MobiDBLite consensus disorder prediction 11 32 - -
Aev06g3198 347 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Aev06g3198 347 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Aev06g3198 347 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3198 Aev-Chr6 33474949 33475992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3198 38 94 AP2-EREBP Transcription Factor Family AT5G19790 73.684 2.79e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aev06g3198 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3198 K09286 - gmx:100799444 305.449