Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3172 ATGGTGAGGGGAAAAACTCAGATGAGGCGTATAGAGAACGCAACAAGTAGACAAGTGACATTCTCAAAGAGGCGAAATGGCCTTCTCAAAAAGGCCTTTGAGCTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATTTTCTCTCCTAGAGGCAAACTTTATGAATTTGCTAGCTCCAGCATGCAGGAAACAATTGAACGATACCGCAGGCATACAAGGAGTGCTCAAACAGCACCCAGATCGGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAGCTTGATGAAGAAGATTGAGATCCTTGAAGCTTCAAAACGGAAACTCTTGGGAGAAGGTTTGGGAACATGCTCCTTAGATGAACTGCAACAGATAGAACAACAATTGGAAAAGAGTGTAACCAGTGTTAGAGCAAGAAAGACTCAGGTTTACAAGGAACAGATTGAGCAACTAAAAGAGAAGGAAAAGGCTCTAGTTGCTGAAAATGCCAGGCTTACTGAGCAGTATGGTGGTATGCAATCAAATCCAGCAGCCACAACAATTGATAAAAAAGAAAATCAAGGCTATGCAGAAAGTAGTTCAAGTTCAGATGTGGAGACAGAATTGTTCATTGGACTACCTAGGTCTTGTTGA 639 0.4163 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHTRSAQTAPRSDEQNMQHLKQETASLMKKIEILEASKRKLLGEGLGTCSLDELQQIEQQLEKSVTSVRARKTQVYKEQIEQLKEKEKALVAENARLTEQYGGMQSNPAATTIDKKENQGYAESSSSSDVETELFIGLPRSC* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3172 212 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Aev06g3172 212 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Aev06g3172 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev06g3172 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev06g3172 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev06g3172 212 PANTHER MADS-BOX PROTEIN SOC1 1 209 - -
Aev06g3172 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev06g3172 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev06g3172 212 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Aev06g3172 212 Coils Coil 143 170 - -
Aev06g3172 212 Coils Coil 87 107 - -
Aev06g3172 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev06g3172 212 PANTHER MADS BOX PROTEIN 1 209 - -
Aev06g3172 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev06g3172 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev06g3172 212 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev06g3172 212 MobiDBLite consensus disorder prediction 172 202 - -
Aev06g3172 212 MobiDBLite consensus disorder prediction 172 212 - -
Aev06g3172 212 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3172 Aev-Chr6 33244198 33253230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3172 1 158 MADS-box Gene Family AT2G45660 79.747 1.79e-89 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev06g3172 K-box 2.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3172 - - gmx:100784678 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g3172 06 33244198 33253230 Aev06g3172 06 33244198 33253230 ECH
Aev06g3172 06 33244198 33253230 Aev02g0375 02 2752698 2761218 PCT