Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3118 ATGCCCCTCCACCCCGAATCCTCCTCCATCTTCTCCCCCTTCAAACACTACCACCACCAGAACCACCGTACCACCAGTGCTGCCGCTGTCGCCGTCCTCAATTTCCGTCAGTGGATCGACGCGCTAAACGCCATGGCCTATCTCTGGCAGACCCGCCTGGAGGAGAAGCATGACCTCACTCCGGAGCTCACTTCGAACGTCTTGCTGCCCTCCGACAAGGACGAGCTCCAGAAACGCTTGCGCGAGATCTTCGCAAGGCACGTGAGGTGTTTGATGGAAGGTGGGAAAGAGTTGAAGCGTTGGCTTGACGAAATCGAACGGCTATCGAAGGAGATCGCGAGCATAAAGGCCCTTCTAAAGAATGCCCTTCAACTTCGGGCTGCTAATGTGCAGTTGGAGAAGAAGGAGGTTCTAGAAGACGAGAAGAAGCTCGTGGAGAGGAGGGTATGGGAGTTTCGGTGCGCCATGGGGTGCTTCCTGAATGTTCTAGAAGATAATAATGAGGAGAATCAGAAAAGTGATTATGATGGTTTTGATGATGTGTTTAGGTTTGATGGAAGGTTGTTGTTTGATTGGAAGAGGGTTCACTCTTTGATCATGAGGGAATGCCGTAGGCTTCAGGAGGGTTTGCCCATTTATGCTTACCGGAGGGATATTCTTTGGGAAATTCACCATCAGCAGATAATGGTATTGGTTGGAGAGACTGGTTCTGGAAAGAGTACACAGTTTGTTCAGTTTCTAGCTGATTCGGGCATTGGAGCTAATGAGTCGATCATATGCACCCAACCCCGCAAGATAGCTGCCAAGTCCTTGGCTCAAAGAGTATATGACGAAAGTATTGGCTGTTATGAAGGCAAAGCAGTCAATAGTTATACTACATTTTCATCCTTGCATGAGTTTGATTCAAGAATAACATTCATGACAGACCACTGTTTACTGCAGCACTACATGAATGATAATAATTTGACCGGAGTCTCTTGCATCATAGTTGACGAGGCCCATGAAAGGAGCTTAAATACTGATCTGTTGTTGGCATTAATCAAGAAGTTACTGTGTAGGAGGGTTGAAATGCGGCTTATCATTATGTCTGCCACAGCTGATGCAAAGCAGTTATCTGATTACTTCTATGGTTGTGGAATTTTTTATGTGCTTGGAAGAAGCTTTCCGGTGGATGTGTTATATGTTCCGTCTGATGACTACACAGGATATTCTGGTTCTGGTATTGCCTCGTATGTTTCTGATGTTGTCAAAATGGCGACCGAGATTCACAAAACAGAGAAAGAGGGGACTATTCTTGCCTTTTTGACTTCACAGGTAGAAGTAGAATGGGCCTGTGAAAATTTTCATGTTCCCTCTGCTGTTGCTCTCCCCTTACATGGAAAGCTTTCGTCTGAAGAGCAATTTCATGTTTTCCAGAACTACCCTGGAAAAAGAAAAGTTATATTTGCAACAAATCTCGCTGAGACATCACTTACAATTCCTGGTGTTAAATATGTGATAGATTGTGGGTTGGCTAAAGATAGTTGTTTTGATCCTGGCAGTGGAATGAATGTACTGAAGGTTTCCTGGATCAGCCAGAGCTCTGCTAATCAACGGGCTGGCCGTGCTGGGAGGACTCAACCTGGTCGGTGCTATAGATTATACTCGGAAGGTGATTATGAGTCGATGTTGCTAAACCAAGAGCCTGAGATTCGAAGAGTTCATCTTGGTGTTGCAGTTTTGAGGATCCTTGCTTTAGGGGTGAAGAATGTGAAGAGTTTTGATTTTGTTGATGCTCCAAGTCCTAGCTCTATTGAGATGGCAATCCAGAATCTAATTCAGATAGGAGTTGTTAAACTTAACAATCATGTTATTGAATTAACTCATGATGGTAGGTGCTTGGCAAGAATGGGAATTGAACCTAGGATTGGTAAATTGATTCTTGGATGTGCTCAACATGCTATGAATAGAGAAGGTGTTGTTCTTGCTGCAGTGATTGCCAATGCCAGTAGCATATTTTGCAGAGTTGGTAATGAATGCGATAAACAAAAATCTGATTGTCTTAAAGTGCAGTTTTGCCATCGAGATGGTGACCTCTTCACTCTTCTCTCTGTCTACAAGGAATGGGAAGCTTTGCCTAGAGAGAGGAAGAATCAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAGACACAATTTTGGAGCTAGAATCTTGCCTTGAGCGTGAACTTAAAATTGTTGTTCCAAGCTACTGGCGATGGAACCCCTTTGTGCCCTCTGAATATGATACTTATCTGAAAAGGGTTATACTGTCATCGCTCCCTGAGAATGTAGCCATGTACTCTGGAAGCAAACAACTTGGTTATGAAGTGGCACAAACTGGGAAACATGTTCAACTTCATCCGTCTTGTTCATTGCTTGTATTTGCTCAGAGACCTAGTTGGGTGGTTTTTACTGAGATTCTTTCAGCTTCTAATCAATATTTGATCTGCGTAAACGCATTTGACTTTGACTCGTTATATGATCTTAACCCTCCTCCCTTGTTTGATGTGGACAAGATAGAAAAGCGGAAATTGCAGACAAGGACGTTGAATGGCTTTGGCAGTACTCTTTTAAAGAGATTTTGTGGGAAAGCTAACAGTAATTTGCTTGGTCTTGTCTCGCGTATACGCAAAGCTTGTACAGATGAACGAATCTTCATTGAAGTCAATATTGACCATAATGAGATTCAGTTATATGCCACTTCACATGATATGGAAACAGCTCTTGGTTTCATTAATGATATGTTAGAATATGAGAAGAAGTGGCTACGTTCTGAATGTATGGAAAGATATTTGTATCATGGGTCTGGTTTCTCACCTTCTGTAGCTTTGTTTGGTTCTGGTGGTGAGATAAAGCATTTGGAACTTGAGAAGCGTTCCTTGAGTGTTGATGTTTGTCACCCAGATATGAATGCAATTGATGACAAGGATCTCTTGATGTTTCTTGAGAAGAAGACCTCAGGTAGTATCTGTTCCGTGCACAAGTTCACAAGCATGGCAAATGATTCTGAAGATAGGGGAAACTTGTGCAGGATTACATTTCTCTCCCCTGATGCTGCTGTAAGAGCTGCTGAATTAAATGGAGAGGAGTTTTGTGGCTCTGTCCTGAAAATTTTCCCCTCACAAACAGCTGCTGGAGGGGATAAATCCTTTTTGTTTCCTGCTGTCAAAGCAAAAATTTCTTGGCCTCGTAGGCTTAGCAGGGGGTTTGCTGTACTTAGATGTGATCTAAAGGATGTCGATTGCATCTTGAGAGATTTCTATAACCTTGCCATTGGAGGAAGGTATGTACGGTGTGAACGTGGCAGAAAAGAGGCGGATAGTGTTGTGATAAGTGGGATTGACAAAGAGCTCTCGGAAACCGAAATTTTAGATGTACTAAGAAGTGCTACGAGCAGAAGGATTTTGGACTTTTTCTTGATTAGAGGGGATGCTGTTGGAAATCCTACAACAAGTGCCTGTGAAGAGGCACTCCTGAAAGAAATTTCCCCCTTTATGCCCAAAAGAAACCCCCATGTTAGTTCCTCCCATGTTAGTTCTTGTCGAGTTCAGGTGTTCCAACCTGAGCCCAAGGATGCATTCATGAGAGCTTTACTCACTTTTGATGGAAGACTGCATTTAGAGGCAGCCCAAGCTTTGGAGCAAATTGAAGGAAAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTGCCAGCATGTCTTTCATAGCTCCTTGACATTTCCCGTGCCGGTGTATCGTGTGATTAAAGAAGAACTGGAGAAAGTACTTGAACGCTTCAGCAAAATGAAGGGTCTTGAATGGAACCAAGACAAGACTGCTAATGGCTCCCACCGAGTGAAAATAACAGCCAATGCTACAAAGACAGTAGCAGAATTTAGGAGACCTCTGGAAGAACTATCAGGAGGGAAAACCGTTGAGCATGACAGCCTCACGCCTGCAGTTCTACAACTCATGCTGTCAAGAGAGGGTTTTAATCTCAAGAACTCGTTGCAGCAAGAAACCGGAACTTACATTCTTTTCGACAGACACAGCATGAACTTGAGGGTGTTTGGTTCGCCAGACAAGGTTGCTTTGGCTCAGCAGAAGGTGATTCAGTCTCTACTCTCTCTCCATGAGAGAAAGGGGTTAGAAATCCATTTGAGGGGGCGAGATCTACCTCCTGATTTAATGAAGCAGGTTGTCAAGAATTTCGGGCCTGATCTCCGTCGACTGAAAGAGAAGGTACCTGGGGCAGATCTTACACTCAACACACGCTACCAGATGATCTTTCTTAGTGGTGACAAGGAGTTGAAACCAAAAGTAGAGGAATCCATTTTTGAGGTCGTGCATTCGACTCCTCATACTGTCAGGCGACCTGGGGCTGGATCTAGTTGTCCGATTTGCTTGTGCGACGTTGAGGATGGATACCGGCTTGAAGCCTGTGGTCATTTGTTCTGTCGGTTGTGTCTGGTGGAGCAATGTGAATCTGCTATAAGAAACCAAGGGAGTTTCCCAATATGTTGTGCTCACGAGGGCTGTGAAGATCCCATTCTGCTCACAGATTTGAGATCCCTCCTATTGAATGACAAGTTGGAGGAACTTTTTAGGGCGTCCGTGGGAGCTTTCGTGGCATCCAGTGGAGGAACTTACAGGTTTTGCCCATCTCCCGACTGCCCCTCAGTTTATCGGGTTGCAGATCCCGGGACAGGCGGTGAGCCATTCGTATGCGGGGCGTGTTATTCGGAGACTTGTACGAGGTGCCACTTAGAGTACCATCCATACCTTTCATGTGAGAGATATAAAGAATTCAAGGAGGATCCTGATTCATCTCTGAAGGAGTGGTGCAGGGGGAAAGAACATGTGAAGTGCTGCCCTGGTTGTGGTTATACAATTGAGAAGGTTGATGGTTGCAACCATATTGAGTGTAAGTGTGGAAAGCATGTTTGCTGGGTTTGCTTGGAAGTGTTTGGAAGTAGTGATGATTGCTATAACCATTTGAGAAGCATACATATGGCTATCATCTAA 5046 0.4433 MPLHPESSSIFSPFKHYHHQNHRTTSAAAVAVLNFRQWIDALNAMAYLWQTRLEEKHDLTPELTSNVLLPSDKDELQKRLREIFARHVRCLMEGGKELKRWLDEIERLSKEIASIKALLKNALQLRAANVQLEKKEVLEDEKKLVERRVWEFRCAMGCFLNVLEDNNEENQKSDYDGFDDVFRFDGRLLFDWKRVHSLIMRECRRLQEGLPIYAYRRDILWEIHHQQIMVLVGETGSGKSTQFVQFLADSGIGANESIICTQPRKIAAKSLAQRVYDESIGCYEGKAVNSYTTFSSLHEFDSRITFMTDHCLLQHYMNDNNLTGVSCIIVDEAHERSLNTDLLLALIKKLLCRRVEMRLIIMSATADAKQLSDYFYGCGIFYVLGRSFPVDVLYVPSDDYTGYSGSGIASYVSDVVKMATEIHKTEKEGTILAFLTSQVEVEWACENFHVPSAVALPLHGKLSSEEQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDCGLAKDSCFDPGSGMNVLKVSWISQSSANQRAGRAGRTQPGRCYRLYSEGDYESMLLNQEPEIRRVHLGVAVLRILALGVKNVKSFDFVDAPSPSSIEMAIQNLIQIGVVKLNNHVIELTHDGRCLARMGIEPRIGKLILGCAQHAMNREGVVLAAVIANASSIFCRVGNECDKQKSDCLKVQFCHRDGDLFTLLSVYKEWEALPRERKNQWCWENSINAKSMRRCQDTILELESCLERELKIVVPSYWRWNPFVPSEYDTYLKRVILSSLPENVAMYSGSKQLGYEVAQTGKHVQLHPSCSLLVFAQRPSWVVFTEILSASNQYLICVNAFDFDSLYDLNPPPLFDVDKIEKRKLQTRTLNGFGSTLLKRFCGKANSNLLGLVSRIRKACTDERIFIEVNIDHNEIQLYATSHDMETALGFINDMLEYEKKWLRSECMERYLYHGSGFSPSVALFGSGGEIKHLELEKRSLSVDVCHPDMNAIDDKDLLMFLEKKTSGSICSVHKFTSMANDSEDRGNLCRITFLSPDAAVRAAELNGEEFCGSVLKIFPSQTAAGGDKSFLFPAVKAKISWPRRLSRGFAVLRCDLKDVDCILRDFYNLAIGGRYVRCERGRKEADSVVISGIDKELSETEILDVLRSATSRRILDFFLIRGDAVGNPTTSACEEALLKEISPFMPKRNPHVSSSHVSSCRVQVFQPEPKDAFMRALLTFDGRLHLEAAQALEQIEGKVLPGCLSWQKIKCQHVFHSSLTFPVPVYRVIKEELEKVLERFSKMKGLEWNQDKTANGSHRVKITANATKTVAEFRRPLEELSGGKTVEHDSLTPAVLQLMLSREGFNLKNSLQQETGTYILFDRHSMNLRVFGSPDKVALAQQKVIQSLLSLHERKGLEIHLRGRDLPPDLMKQVVKNFGPDLRRLKEKVPGADLTLNTRYQMIFLSGDKELKPKVEESIFEVVHSTPHTVRRPGAGSSCPICLCDVEDGYRLEACGHLFCRLCLVEQCESAIRNQGSFPICCAHEGCEDPILLTDLRSLLLNDKLEELFRASVGAFVASSGGTYRFCPSPDCPSVYRVADPGTGGEPFVCGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLKEWCRGKEHVKCCPGCGYTIEKVDGCNHIECKCGKHVCWVCLEVFGSSDDCYNHLRSIHMAII* 1682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3118 1681 SUPERFAMILY RING/U-box 1555 1610 - -
Aev06g3118 1681 Gene3D - 192 386 IPR027417 -
Aev06g3118 1681 SUPERFAMILY RING/U-box 1625 1673 - -
Aev06g3118 1681 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 326 335 IPR002464 -
Aev06g3118 1681 SMART ibrneu5 1536 1604 IPR002867 -
Aev06g3118 1681 SMART ibrneu5 1605 1669 IPR002867 -
Aev06g3118 1681 Pfam Helicase associated domain (HA2) 601 695 IPR007502 GO:0004386
Aev06g3118 1681 SMART ultradead3 208 393 IPR014001 -
Aev06g3118 1681 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 764 838 IPR011709 -
Aev06g3118 1681 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1503 1597 - -
Aev06g3118 1681 SMART helicmild6 442 540 IPR001650 -
Aev06g3118 1681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 414 580 IPR001650 -
Aev06g3118 1681 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 30 1427 - -
Aev06g3118 1681 ProSitePatterns Zinc finger C2H2 type domain signature. 1656 1677 IPR013087 -
Aev06g3118 1681 SUPERFAMILY RING/U-box 1471 1535 - -
Aev06g3118 1681 Pfam Helicase conserved C-terminal domain 421 539 IPR001650 -
Aev06g3118 1681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1468 1547 IPR013083 -
Aev06g3118 1681 Pfam DEAD/DEAH box helicase 222 371 IPR011545 GO:0003676|GO:0005524
Aev06g3118 1681 ProSiteProfiles Zinc finger RING-type profile. 1472 1514 IPR001841 -
Aev06g3118 1681 ProSiteProfiles TRIAD supradomain profile. 1468 1676 IPR044066 -
Aev06g3118 1681 Gene3D - 387 561 IPR027417 -
Aev06g3118 1681 Gene3D - 562 605 IPR042035 -
Aev06g3118 1681 SMART ha2_5 600 696 IPR007502 GO:0004386
Aev06g3118 1681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 384 IPR014001 -
Aev06g3118 1681 ProSitePatterns Zinc finger RING-type signature. 1488 1497 IPR017907 -
Aev06g3118 1681 PANTHER ATP-DEPENDENT RNA HELICASE 30 1427 - -
Aev06g3118 1681 Coils Coil 91 148 - -
Aev06g3118 1681 PANTHER ATP-DEPENDENT RNA HELICASE 1503 1597 - -
Aev06g3118 1681 CDD DEXHc_RHA-like 227 383 - -
Aev06g3118 1681 Pfam IBR domain, a half RING-finger domain 1550 1604 IPR002867 -
Aev06g3118 1681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 718 IPR027417 -
Aev06g3118 1681 CDD SF2_C_RHA 388 548 - -
Aev06g3118 1681 Gene3D - 1582 1678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3118 Aev-Chr6 32738099 32744277 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3118 1462 1664 ARIADNE family AT3G27710 30.374 8.82e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3118 K12818 - gmx:100810008 2534.98