Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3080 ATGAATTTAAAGCATTGCATGAACATCGCATGCGGCGCATCCTCCGTGTCGACGCGGTGGCGCAGGGGTTGGGTAATGCAATCTGGTGGTTTCGCCGTTCTCTGTGATAAATGCGGGTTTATTTATGAACAATCAAAGTTTTGTGATGTATTCCATTGCAATGATCCTGGCTGGAGACAATGCAATTTTTGTGGCAAGTATCTTCATTGTGGATGCATTGTCTCTCAATATTTGTATGAGTTACATGATACTAATGGTATAAGATGTGCAATTTGTGCAAGAAAAGCAAGACATCAACCTGTTATTACTCAGACCTTAGGTGCTGCTTCTTTAGGGAATTCATCAATTCCCTTCCACAGTGCTGCTATTGTTGATGATGAAAGGGAAAAAATTCTACGAGGGACGAAGTTTCGCCCTATTTTACCGGCGATCCCTTCATCAGAATCAGAGGCAAATAATGCAAGCTTCGCACTTAGGACTAATGTTGCAATGACACTTCCTATAGTTCGCACGGATCGTCACTTACTTGCTCGCTATTCCCCTAGGACTACTGATCAAGAGCTCCAACAACTGTCGGAGGATTCAAATTCAGTTGTTGTTGCTCTGTTTGAGAAGGTGCTAACTCCAAGTGATGTTGGTCCAACTGCTCGCATAGTCCTTCCAAAGTCATGTGCTGAAGTATATTTTCCTCCAATTTCAGAACATGAGTGTATTTCTTTAGAAATCCATGATGTTAACAGAAACAAATGGACGGTGCAATTCAAGTTATGGGTCAATAGTAGCAGCACGATGTATGTTTTAGAAGGTGTACGACCCTTCATTCAGGCCATGCAATTGAAACCTGGAGATACTGTAACATTTAACCGCATGGACCCTAAGGGCAAACTTATGATAGGGGTTCGTCGGAAGGAACCATCACCACCACCGCCATCGCAGTTGCCGCCACCACCTTCTGCTGCACAGACATCACCACATGAAAGTTCTCCTAAGAAGAAAATAACTGAGAGGTTGCCTATTGTAAGCCAAGAAGGTGTATTGAAAGTGGCTCTTGACATGGCAACCAAAACTCCTATATTTGTGAATAGGAGTATATTCATGGCTCGCTCAAATAGGGTGAATGAGCAATGGACTCAGTGTGATAGTTGCTCAAAATGGAGAAAGATACCATCTGATATTATTCTTCCTCCTAATTGGACATGCCTGGATAATATATGGGATCAGAGCAGGTCTTCATGTTCTGCTCCCAATGAATTGACCCCAATGGAACTGGAAAATCTTTTGAAAATGAACAATAATCAGGGAATGCATCTTTTAGCGGATACTACAATACTGGACGACATTGCAGGAAAAAATACTAGCAAGAACAAGGATTCAAGCATCATCACTACAAATCACACACATCAGAAACAACAACCAAGTGGAAAGGGGAAACACAAAGCAACATGCACCTGCAATGAGTGCATGATAGTTAAGAATCAGACAAGGGTGAAGATGATGCAAGACATGAATCGCCAATCCGAACGCGAAACAGGGGTTCTCAAGTTGCAATTCCGACAGTTTAATTGA 1566 0.4227 MNLKHCMNIACGASSVSTRWRRGWVMQSGGFAVLCDKCGFIYEQSKFCDVFHCNDPGWRQCNFCGKYLHCGCIVSQYLYELHDTNGIRCAICARKARHQPVITQTLGAASLGNSSIPFHSAAIVDDEREKILRGTKFRPILPAIPSSESEANNASFALRTNVAMTLPIVRTDRHLLARYSPRTTDQELQQLSEDSNSVVVALFEKVLTPSDVGPTARIVLPKSCAEVYFPPISEHECISLEIHDVNRNKWTVQFKLWVNSSSTMYVLEGVRPFIQAMQLKPGDTVTFNRMDPKGKLMIGVRRKEPSPPPPSQLPPPPSAAQTSPHESSPKKKITERLPIVSQEGVLKVALDMATKTPIFVNRSIFMARSNRVNEQWTQCDSCSKWRKIPSDIILPPNWTCLDNIWDQSRSSCSAPNELTPMELENLLKMNNNQGMHLLADTTILDDIAGKNTSKNKDSSIITTNHTHQKQQPSGKGKHKATCTCNECMIVKNQTRVKMMQDMNRQSERETGVLKLQFRQFN* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3080 521 ProSiteProfiles Zinc finger CW-type profile. 370 420 IPR011124 GO:0008270
Aev06g3080 521 ProSiteProfiles B3 DNA-binding domain profile. 203 304 IPR003340 GO:0003677
Aev06g3080 521 Pfam CW-type Zinc Finger 375 417 IPR011124 GO:0008270
Aev06g3080 521 MobiDBLite consensus disorder prediction 299 336 - -
Aev06g3080 521 MobiDBLite consensus disorder prediction 303 322 - -
Aev06g3080 521 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 97 - -
Aev06g3080 521 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 102 512 - -
Aev06g3080 521 CDD B3_DNA 202 302 IPR003340 GO:0003677
Aev06g3080 521 Pfam B3 DNA binding domain 203 303 IPR003340 GO:0003677
Aev06g3080 521 SUPERFAMILY DNA-binding pseudobarrel domain 202 306 IPR015300 -
Aev06g3080 521 Gene3D - 181 305 IPR015300 -
Aev06g3080 521 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 97 - -
Aev06g3080 521 MobiDBLite consensus disorder prediction 454 477 - -
Aev06g3080 521 Gene3D - 373 429 - -
Aev06g3080 521 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 102 512 - -
Aev06g3080 521 SMART B3_2 203 304 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3080 Aev-Chr6 32415619 32422711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3080 357 504 B3 DNA Binding Superfamily AT4G32010 38.012 1.40e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aev06g3080 B3 4.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3080 - - ming:122084429 345.125