Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3078 ATGCAATTGCATCGCCATATTCTCGAAACAGAATTGAGCTTGCCACCATCTTCTTCTTCTTCTTATGGCAACACGAACATCATCAAGACCCACGATTCTTCCTTCATCAACGACACAAACTTCGACACCAACATGGTAATCATCCTCGCAGCACTCCTATGCGCCCTCATATGCGCCTTAGGCCTAAACTCCATAGCTCGATGCGCACTCCGCTGTGGCCGCCGGTTCTCGCCGGAGCAGGAGGCGGCGAGGCTGGCAGGCACGGGGCTGAAGAAGAGCCACCTTCGGAGGATTCCAGTGGCGGTGTACGGCTCCGGCCAGAATATTCCGGCGACGGAGTGCCCCATATGCTTGGGCGAGTTTGAGAAAGGGGATAAGGTGAGGATGCTGCCACAGTGCAACCACGGTTTCCACGTGCGATGCATTGACACGTGGCTACTCTCGCATTCTTCTTGCCCCAATTGTAGACATTCCTTGCTCGAGGGGCCTAAAAAACCTGCTAATTGCTCTTCCGTGGCTGGCGGCGGCGGCGGCGGTGGCGGTGGAGCGGCGGTAATGGAAAATGGGTCCGGCGATGTGGGAGGAGGAGGTAGTGTGGCGGTGGTCGTCGAGCGGGCAAGAGGGGTTGGCGGAGAGACGATGGCGGCCGGATCTGAAAGTGGTGGTGGCGGTGAAGAAGTGGGATGGGAGGAGGCTGTGGATGGTGGCAAAGGGGAGAGAGGTAAGGCTTACAGGAGAAGAGAAGTGGTGGATGGGTTGAAGGAGAAAGAAAGAGAGATTTGTTATGAAGTGCAGAAGTCATTTCAATCACTGCACGCGCTTCGGAGCATGGGAGTCCATAATCCATTTCACACGAATAGAAGCACAGACGCACAGACTATGCAAGTAGCTGAGCGAAGAGGTCAATCATGGAGAATCCACATCACATCCAAAGCCAGAAGCTTCAATTTCAGATTCAAATTCAAATTCACTTCTACGAGATTTACACCCAATCGGACCCTTTCCTCTTTCCGCCTCTCCATTGTCCTCAAGCTTCGTAAATTCATCCTCAAAATCAATTCAAACCCTACTTTTTCACCCAAAATAAATTCACAACCTTCTACTACTAAGCCAAAAAATGCACGAGGGTTCTTTAAAGCCATAGTCATGATTATTGTTCGCAAATTTCGAGCTCGGTTGGCCAAAATTGCTGCTAAGCCAGAATCACACGCAGTATATCCAAAGGTTCAACAAATAAAATTGCAGAACACAATTCATATTATTGGACTTTGGGTTGCTGGGTTTCTAGCATCTCTTTCTCAGATTGTCCTCAGTAATGGTCAAAAGGGAGTCATAATGGTTGCTTCTATGCTGTTCAAGAAATTTAACCCGGTCGATCGAGTTTTGAGACAACTTGGGTTGATGAAGCATATCCCTCAGCCGCCCTTAGATATTGAGAGATGGGCATATAGGGCCGAAAGTGTTGTCTACATTATGCCTGTAGTGGACCCGAGACCGTTATATGGACCACCGACTATGAACCTGAATTGGGTCGTGGACCACCACTCCATATATTCTGCAGACGGTCTCGGGTCCACTACAGGCATAGTGTAG 1593 0.4984 MQLHRHILETELSLPPSSSSSYGNTNIIKTHDSSFINDTNFDTNMVIILAALLCALICALGLNSIARCALRCGRRFSPEQEAARLAGTGLKKSHLRRIPVAVYGSGQNIPATECPICLGEFEKGDKVRMLPQCNHGFHVRCIDTWLLSHSSCPNCRHSLLEGPKKPANCSSVAGGGGGGGGGAAVMENGSGDVGGGGSVAVVVERARGVGGETMAAGSESGGGGEEVGWEEAVDGGKGERGKAYRRREVVDGLKEKEREICYEVQKSFQSLHALRSMGVHNPFHTNRSTDAQTMQVAERRGQSWRIHITSKARSFNFRFKFKFTSTRFTPNRTLSSFRLSIVLKLRKFILKINSNPTFSPKINSQPSTTKPKNARGFFKAIVMIIVRKFRARLAKIAAKPESHAVYPKVQQIKLQNTIHIIGLWVAGFLASLSQIVLSNGQKGVIMVASMLFKKFNPVDRVLRQLGLMKHIPQPPLDIERWAYRAESVVYIMPVVDPRPLYGPPTMNLNWVVDHHSIYSADGLGSTTGIV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3078 530 CDD RING-H2_EL5_like 113 156 - -
Aev06g3078 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 160 IPR013083 -
Aev06g3078 530 MobiDBLite consensus disorder prediction 212 237 - -
Aev06g3078 530 PANTHER RING-H2 FINGER PROTEIN ATL74 4 167 - -
Aev06g3078 530 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 167 - -
Aev06g3078 530 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Aev06g3078 530 Pfam Ring finger domain 113 156 IPR001841 -
Aev06g3078 530 SUPERFAMILY RING/U-box 98 161 - -
Aev06g3078 530 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3078 Aev-Chr6 32371250 32385511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3078 36 166 C3H Transcription Factor Family AT3G10910 64.336 7.15e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3078 K19040 - gmx:100814602 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g3078 06 32371250 32385511 Aev06g3078 06 32371250 32385511 ECH