Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3049 ATGCAAGGAAGGACAAGTATTGGAGATGGTTTTCGCATTAGTGTGTCAAGTACACCTAGCTGTTCAAGTGGAGGATCAGGACCGGATGACATAGAATCTCTAGGTGATGTTTATATATGGGGGCATGTTTGGGCAGATGGGGTTTCAGCTGAAGGGTTTGGGACTCAGGGTCCTTCCATGACCGATGTGTTGATTCCTAGGACCTTAGAATCAGATATTGTTCTTGATGTCCAACAGATTGCATCCGGTGTCCGCCACATTGCTCTAGTCACAAGGCAGGGGGAGGTTTTTACTTGGGGAGAGGAATCTGGGGGAAGACTTGGCCATGGAATCGAAAAGGATTTTGGCCGCCCTCATCTTGTCGAGTTTCTTGCAGTTACTAATGTGGATTTTGTTGCATGTGGGGAGAATCACACATGTGCCGTCTCTACATCAGATGATCTTTACTCATGGGGTGATGGTAGATATAATGTTGGACTTCTTGGCCATGGCACAGATGTTAGCCACTGGATACCGAAGAGGGTCAGTGGCCCTTTGGAAGGGCTTCAAGTTATATCTGTTGCTTGCGGCACATGGCATTCAGCATTGGTAACTTCCAATGGAAAAATATTCACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATCGAGAGAGTGTGTCATATCCAAAGGAGGTACAATTATTGGCTGGATTGAAGACTATTAAGGTTGCATGTGGCGTATGGCACACTGCCGCCATTGTAGAGGTAATGCTTCAGTCCGGCTCAAATGTTTCGTCGAGGAAGCTCTTCACTTGGGGGGACGGTGACAAATATCGTTTGGGACATGGAAACAAGGAAACGTACCTTCAACCGACTTGTGTCTCTGCACTCATCGAATACAATTTCCTCCAGATAGCATGTGGACAAACTATGACCATTGGCCTCACTACATCCGGTCATATCTTTACTATGGGAGGCACTGAGTATGGTCAACTAGGCAATACTTCGTCTGATGGAAAATTCCCTGAGCTAGTACAAGATAAGTTGGTTGGTGAATTTGTCGAGGAAATATCGTGCGGATCTCATCATGTCGCTGTCTTGACATCAAGAAGTGAACTGTATACTTGGGGGAGAGGTGCCAATGGAAGATTGGGACACGGAGACACAGAGGACAGGAACAGTCCGACTATGGTTGAAGCCTTTAAAGAAAGGCATGTAAAGAATATATCGTGCGGCTCGAACTTTACATCTTGCATATGCATCCATAAATGGGTATCAGGAGTTGACCAATCTGTTTGCAGTTCTTGTAGGCAACCGTTTGGTTTCACTAGAAAAAGGCACAACTGTTATAATTGTGGGTTGGTGCATTGTCATGGTTGTAGTTCAAAGAAGGCGCTTAGAGCCGCTTTGGCTCCAACGCCCGGAAAACCTCATCGTGTGTGCGATGCGTGTTATACTAAGCTCAAAGCAGTTGAGGCTGGTTCTGTTTCCAATCTTAACAGAAAAGTCACACCACATCGTAGTTCCGTAGAAGGAAGGGAAAAATTTGTCCTTGGAGAAGTAAGGTCTTCAAGAACACTATTCCATCCTATCATAGAACCAACAAAATTCCTTGACATAAGGACTAATAAGCGTGTGAACAAATATGATTATTCTTCCACTGGCCAAGGCTCTCTAGTTCCATCACATCTACAACTGAAAGATGTTTCGCTTCCAAGTTCCATGCAACATCTTTCGAAGCCTACTATACCTCAGAGTCCACCATCAGCTTCACCACTCCATTCAAGACCGGCATCTCCATATGCAAGAAGGGCAGGCTCGCCGCGTTCCGGAACTCCGGGATTCTCTAAAAGTCTTATTGATAGCTTGAAGAAAACAAATGAGCTTTTGAACCAAGAAGTCTCAAAATTACAGAATCAAATTCGAAGTTTGAAACAGAAAAGTGACATGAAAGATGAGGAAATCGAAAAGCTTCAAAAAAATATTAAGGGAGCCATCTCGGCGGTGGCAGAGGAATCTTCTAAGCATAAAGCAACAAAAGAATTTTTTGAGTGCACTATAGATCAGCTGAAGGAAGTGACTGAGAAGTTGCCACCAGAGATTTCAGAGAGTGAAAATTTGAGAACCATGGTTACTCAAGCTGAAGATTTTCTAAAGAAAAATTCAGAATCTGCAAGATCTTCCTTTTTATCAAACTTGGAACCTGAGCAACAAAATGCACCTAATACACCCGCCTCGGATATTGGCTCTTCTAAACTACTAGAACACAGTATAGAAGAGAGTATTGAAGCTGCAACAGTTAACGAATCTCGTGATGAGGAAAATGCCATTGAAGAAAGCAACGAATCATCTTCTATATCTAATGCTGATTCAGCAGTGCCTCCACAAAGCTCTGAAAATGATTCGAGATCAGAAGGGTCTTCGAGGACAGAGAGAGAAGTAGAAACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTAACACTTATAGTAAAGCCTGGTGGTACCAAAGTTTTCAAGAGAGTAAGATTCAGTAAAAGAAGGTTCCATGAGCACCAAGCAGAAGAATGGTGGAGTGGAAACAAAGATAGGGTACTTAGGAAATATAATCCAGTAGTTGCAAATGTTGTAGCTTCTGCATCATCTAGTACTCCACCACCTTCTGAAGAAAATATTGAAGCAGAACCTTCATGA 2685 0.4324 MQGRTSIGDGFRISVSSTPSCSSGGSGPDDIESLGDVYIWGHVWADGVSAEGFGTQGPSMTDVLIPRTLESDIVLDVQQIASGVRHIALVTRQGEVFTWGEESGGRLGHGIEKDFGRPHLVEFLAVTNVDFVACGENHTCAVSTSDDLYSWGDGRYNVGLLGHGTDVSHWIPKRVSGPLEGLQVISVACGTWHSALVTSNGKIFTFGDGTFGVLGHGDRESVSYPKEVQLLAGLKTIKVACGVWHTAAIVEVMLQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFLQIACGQTMTIGLTTSGHIFTMGGTEYGQLGNTSSDGKFPELVQDKLVGEFVEEISCGSHHVAVLTSRSELYTWGRGANGRLGHGDTEDRNSPTMVEAFKERHVKNISCGSNFTSCICIHKWVSGVDQSVCSSCRQPFGFTRKRHNCYNCGLVHCHGCSSKKALRAALAPTPGKPHRVCDACYTKLKAVEAGSVSNLNRKVTPHRSSVEGREKFVLGEVRSSRTLFHPIIEPTKFLDIRTNKRVNKYDYSSTGQGSLVPSHLQLKDVSLPSSMQHLSKPTIPQSPPSASPLHSRPASPYARRAGSPRSGTPGFSKSLIDSLKKTNELLNQEVSKLQNQIRSLKQKSDMKDEEIEKLQKNIKGAISAVAEESSKHKATKEFFECTIDQLKEVTEKLPPEISESENLRTMVTQAEDFLKKNSESARSSFLSNLEPEQQNAPNTPASDIGSSKLLEHSIEESIEAATVNESRDEENAIEESNESSSISNADSAVPPQSSENDSRSEGSSRTEREVETQVIEQFEPGVYVTLIVKPGGTKVFKRVRFSKRRFHEHQAEEWWSGNKDRVLRKYNPVVANVVASASSSTPPPSEENIEAEPS* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3049 894 Pfam FYVE zinc finger 419 485 IPR000306 GO:0046872
Aev06g3049 894 ProSiteProfiles BRX domain profile. 812 867 IPR013591 -
Aev06g3049 894 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Aev06g3049 894 MobiDBLite consensus disorder prediction 1 28 - -
Aev06g3049 894 Pfam Transcription factor BRX N-terminal domain 667 702 IPR027988 -
Aev06g3049 894 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Aev06g3049 894 SUPERFAMILY RCC1/BLIP-II 35 420 IPR009091 -
Aev06g3049 894 MobiDBLite consensus disorder prediction 875 894 - -
Aev06g3049 894 SMART fyve_4 417 486 IPR000306 GO:0046872
Aev06g3049 894 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Aev06g3049 894 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Aev06g3049 894 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Aev06g3049 894 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 494 IPR013083 -
Aev06g3049 894 MobiDBLite consensus disorder prediction 1 27 - -
Aev06g3049 894 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 41 93 IPR000408 -
Aev06g3049 894 MobiDBLite consensus disorder prediction 760 813 - -
Aev06g3049 894 Gene3D - 257 425 IPR009091 -
Aev06g3049 894 CDD FYVE_like_SF 429 481 - -
Aev06g3049 894 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 1 874 - -
Aev06g3049 894 Pfam Transcription factor regulating root and shoot growth via Pin3 812 866 IPR013591 -
Aev06g3049 894 MobiDBLite consensus disorder prediction 718 745 - -
Aev06g3049 894 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 874 - -
Aev06g3049 894 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Aev06g3049 894 MobiDBLite consensus disorder prediction 570 614 - -
Aev06g3049 894 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Aev06g3049 894 Pfam Regulator of chromosome condensation (RCC1) repeat 265 309 IPR000408 -
Aev06g3049 894 Pfam Regulator of chromosome condensation (RCC1) repeat 147 196 IPR000408 -
Aev06g3049 894 Pfam Regulator of chromosome condensation (RCC1) repeat 368 415 IPR000408 -
Aev06g3049 894 Pfam Regulator of chromosome condensation (RCC1) repeat 200 249 IPR000408 -
Aev06g3049 894 Pfam Regulator of chromosome condensation (RCC1) repeat 94 142 IPR000408 -
Aev06g3049 894 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Aev06g3049 894 Gene3D - 19 256 IPR009091 -
Aev06g3049 894 SUPERFAMILY FYVE/PHD zinc finger 419 487 IPR011011 -
Aev06g3049 894 Coils Coil 616 671 - -
Aev06g3049 894 MobiDBLite consensus disorder prediction 776 799 - -
Aev06g3049 894 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 187 197 IPR000408 -
Aev06g3049 894 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Aev06g3049 894 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Aev06g3049 894 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Aev06g3049 894 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Aev06g3049 894 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Aev06g3049 894 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Aev06g3049 894 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Aev06g3049 894 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3049 Aev-Chr6 32043382 32047109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3049 813 867 Major Intrinsic Protein MIP AT1G31880 40.000 2.75e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3049 - - ahf:112742992 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g3049 06 32043382 32047109 Aev02g1931 02 21148528 21152816 PCT