Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g3001 ATGAAGCCTGAAACCATTTCTGGAAATAGGAAATCACGCAGGAGACGCAGTGGGGGAAGTGACTCAGTTGAACACACTCTAGAGAGGTGGAAGGAGTATAACAGGCTACAACAAGAACAACAACAACTTGGGTCTGGAAGAGATGGGGTGGAAGTGATTCACAAGGTTCCTGCAAAAGGGTCTAGGAAAGGATGTATGAGAGGAAAAGGTGGGCCTCAGAACTCTGATTGCAAGTTCAGAGGTGTGAGGCAGAGGATTTGGGGCAAATGGGTTGCTGAGATTCGCGAACCGATCAACAGTAAGCTTGTTGGTGATAAACCAAACAGGCTTTGGCTTGGTACTTTCTCTACTGCACATGAAGCTGCTCTAGCTTATGATGAAGCAGCAAGGGCCATGTATGGCCCTTGCGCACGATTGAACTTCCCTCAGTATAGTGTGGAATCAGTAGGCTCGAATAACGGATCACCAACTAGTGCATCTGATAAAAATTCACCAAGTGGTTCTGCAGATACTTTGGATGGTAGTGGTGAGCTTGCAAGAACTCTAGGGTTTGAGGGGAATCTTCATCAGATTCATGAAGACAACACCAAATTTTCTGAGGTTAGGGGTGTCTCTGAGGAAACAGAAGAGAAACAGGTTGTGTCTCAGGACTCAGTGGAGATAGGTGAGAATTGGAAGGGAAGAATCCATCAAGGGCCTTTAGTGAATGTTAAGGTTGAAGTGCCGGGAGAAAGTGAGGGATTGGACAAAGAATTAGAAATGGTTTTGAAGAACTCTGGCATATGTGGAGAGGGTAATCACATACAGAAGGAGCCTGTGTGTATGGCCATGAATACAGGAGCTGATTGCAGCTCTTCTAATACACATGGGATTCTGGTAAAATGTGAAGAAACTGTGAGCAATGGATACTTGCATAATCCAAGACCAAACTGTGAGCATTTCAACATCAATGCCGTTTCGTCTATCACGACGGAACACATGGAGGAAGTAATTACTGAAATTCTGCATCTTTGTAGAAGCAAGCACGCGAAGATTAGCAATGTTCAGTCACAAAATGAGCAAAGTTCATATAAACAATTTGATGAGATGAAAACTGAGCTTAAAGGTTTGGACTGCAAGATGAGAGTACATTCTAATGATTGCAAGAATGAGGCAGCCATAGTTGGGAATTCCAATCATTCCATACAGAGAAGTCCTATTGTTGCTAGTGGCACTGTCGGATCAATTGAGAGAATGTCTGAAGTTGAGGCTTTGAAGATTAATAGTACTAATAGAGACTCTAAATTGCAAGAAAGAGGAAATAATGGAAATGCACTATCTGGTTTTAGTTCTGGGCAGAGTAGAAAGCTTTCTGATCTTTCTCAACAGTTACAGAAACTGGGTGGTTCCTTGCCTGAACATTTGAATAATGTTCAGTTTGCAGACCTAGAAGTGGGTTATGATTATAGTTTCTTAAGTCCTGATTATGATTTTGGTTTATTAGAAGAGAAGAAGCTACTTGATGTATGCTTTTCACATAGAGGGTCTAGTTCCTAA 1536 0.4225 MKPETISGNRKSRRRRSGGSDSVEHTLERWKEYNRLQQEQQQLGSGRDGVEVIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINSKLVGDKPNRLWLGTFSTAHEAALAYDEAARAMYGPCARLNFPQYSVESVGSNNGSPTSASDKNSPSGSADTLDGSGELARTLGFEGNLHQIHEDNTKFSEVRGVSEETEEKQVVSQDSVEIGENWKGRIHQGPLVNVKVEVPGESEGLDKELEMVLKNSGICGEGNHIQKEPVCMAMNTGADCSSSNTHGILVKCEETVSNGYLHNPRPNCEHFNINAVSSITTEHMEEVITEILHLCRSKHAKISNVQSQNEQSSYKQFDEMKTELKGLDCKMRVHSNDCKNEAAIVGNSNHSIQRSPIVASGTVGSIERMSEVEALKINSTNRDSKLQERGNNGNALSGFSSGQSRKLSDLSQQLQKLGGSLPEHLNNVQFADLEVGYDYSFLSPDYDFGLLEEKKLLDVCFSHRGSSS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g3001 511 MobiDBLite consensus disorder prediction 148 176 - -
Aev06g3001 511 Pfam AP2 domain 77 134 IPR001471 GO:0003700|GO:0006355
Aev06g3001 511 CDD AP2 77 142 IPR001471 GO:0003700|GO:0006355
Aev06g3001 511 SUPERFAMILY DNA-binding domain 78 143 IPR016177 GO:0003677
Aev06g3001 511 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 373 - -
Aev06g3001 511 Gene3D AP2/ERF domain 77 144 IPR036955 GO:0003700|GO:0006355
Aev06g3001 511 SMART rav1_2 78 148 IPR001471 GO:0003700|GO:0006355
Aev06g3001 511 MobiDBLite consensus disorder prediction 191 217 - -
Aev06g3001 511 ProSiteProfiles AP2/ERF domain profile. 78 142 IPR001471 GO:0003700|GO:0006355
Aev06g3001 511 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 373 - -
Aev06g3001 511 MobiDBLite consensus disorder prediction 1 27 - -
Aev06g3001 511 MobiDBLite consensus disorder prediction 191 216 - -
Aev06g3001 511 MobiDBLite consensus disorder prediction 148 171 - -
Aev06g3001 511 MobiDBLite consensus disorder prediction 425 447 - -
Aev06g3001 511 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Aev06g3001 511 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g3001 Aev-Chr6 31614123 31616018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g3001 13 176 AP2-EREBP Transcription Factor Family AT2G40340 49.704 6.54e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aev06g3001 AP2 5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g3001 - - aprc:113861479 572.007