Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2931 ATGGAAATGGCTGCCAGCCCTCGCACCGTTGAAGAGATCTTCAAAGACTACAGCGCTCGAAGAACCGCCGTTGTTCGTGCTCTCACTCAAGATGTTGATGATTTTTACGGCCTCTGTGATCCAGACAAGGAGAACTTGTGCCTCTATGGACATCCCAATGAAAGCTGGGAAGTAACTCTGCCAGCAGAGGAGGTTCCACCCGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTCGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGCGATTCATGGTTGCTTTCTGTGGCCTTCTATCTTGGAGCTCGCCTTAACCGCAATGAAAGGAAGCGTTTATTCAGCTTGATCAATGATCTTCCTACTGTCTTCGAAGTTGTGACTGAAAGGAAACCAAATAAGGACAAGCCCACTGTGGATAGTGGAAGCAAATCTCGGGGAAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGATGAGGGTTATGAGGAAGATGAAGACGAGCACAGTGAAACCTTTTGCGGTAGCTGTGGTGGAAACTACAGTGCAGATGAATTCTGGATTGGCTGCGACATATGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCTTCATGCAGCATGAGGCGGAACAGGCCCTAG 720 0.4903 MEMAASPRTVEEIFKDYSARRTAVVRALTQDVDDFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPNKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETFCGSCGGNYSADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSMRRNRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2931 239 MobiDBLite consensus disorder prediction 148 165 - -
Aev06g2931 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Aev06g2931 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Aev06g2931 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Aev06g2931 239 MobiDBLite consensus disorder prediction 134 176 - -
Aev06g2931 239 SMART PHD_3 185 233 IPR001965 -
Aev06g2931 239 Pfam PHD-finger 185 233 IPR019787 -
Aev06g2931 239 CDD PHD_AL_plant 185 235 IPR044104 -
Aev06g2931 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Aev06g2931 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Aev06g2931 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Aev06g2931 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2931 Aev-Chr6 30985814 30989701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2931 4 238 Alfin-like Transcription Factor Family AT5G05610 75.000 1.49e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aev06g2931 Alfin 8.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2931 - - gmx:100793126 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g2931 06 30985814 30989701 Aev06g2931 06 30985814 30989701 ECH
Aev06g2931 06 30985814 30989701 Aev02g1847 02 20294248 20297413 PCT
Aev02g1811 02 19947948 19948358 Aev06g2931 06 30985814 30989701 PCT