Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2910 ATGACGACGGGAAAGGGCAAAGGAGCGGCGAGGAACTCGAAGGAATCATTGAGGCCCGTCGATGACCAAAAGGTAGGGAAGCGAAAAGCTGCTTACAAGCCTGACAAGAGTAGTGCAAGGATGTCAAATAAGGAGAAGAAGGCCAAGAAAGATCCCAACAAACCGAAAAGGCCGCCGAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAAAGATATTCAAGGAAGAAAATCCAAATGTGAAGGCTGTATCAGCTGTCGGGAAAGCTGGAGGAGAAAAATGGAAATCCATGTCTGCGGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAGGTTGAGTATGAAAAACTTATGAATGCTTACAACAAAAAGCAGGCAAGTTCAGCAGATGATGGAGATGATGAATCAGACAAGTCTAAATCTGAAGTGAATGATGAGGATGATGAAGGCACCGGGGAGGAGGGCCACCACGAGGAGGATGATGATGAGGACGATGATGAAGACGACGATGAGGAAGATGATGACTGA 534 0.4663 MTTGKGKGAARNSKESLRPVDDQKVGKRKAAYKPDKSSARMSNKEKKAKKDPNKPKRPPSAFFVFLEEFRKIFKEENPNVKAVSAVGKAGGEKWKSMSAAEKAPYEAKAAKRKVEYEKLMNAYNKKQASSADDGDDESDKSKSEVNDEDDEGTGEEGHHEEDDDEDDDEDDDEEDDD* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2910 177 MobiDBLite consensus disorder prediction 11 56 - -
Aev06g2910 177 CDD HMGB-UBF_HMG-box 55 120 - -
Aev06g2910 177 SUPERFAMILY HMG-box 40 125 IPR036910 -
Aev06g2910 177 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 166 - -
Aev06g2910 177 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 166 IPR031061 -
Aev06g2910 177 MobiDBLite consensus disorder prediction 148 177 - -
Aev06g2910 177 Pfam HMG (high mobility group) box 55 124 IPR009071 -
Aev06g2910 177 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Aev06g2910 177 SMART hmgende2 54 125 IPR009071 -
Aev06g2910 177 MobiDBLite consensus disorder prediction 129 147 - -
Aev06g2910 177 MobiDBLite consensus disorder prediction 123 177 - -
Aev06g2910 177 MobiDBLite consensus disorder prediction 1 59 - -
Aev06g2910 177 Gene3D High mobility group box domain 38 140 IPR036910 -
Aev06g2910 177 PRINTS High mobility group (HMG1/HMG2) protein signature 108 128 - -
Aev06g2910 177 PRINTS High mobility group (HMG1/HMG2) protein signature 89 108 - -
Aev06g2910 177 PRINTS High mobility group (HMG1/HMG2) protein signature 17 37 - -
Aev06g2910 177 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2910 Aev-Chr6 30782061 30783461 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aev06g2910 HMG_box 2e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2910 K25507 - vvi:100256381 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g2910 06 30782061 30783461 Aev06g2910 06 30782061 30783461 ECH