Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2872 ATGCTTCAGATTCGGCTTAGTAAGGTTCCTGCCTCAGAAGGAGCAGCAGGGGTGAAGCCCTCACCCGTTGAGACGGTTACGGTTGCTTGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGATCAGCTACTGCTGCTTCCATTGTTAAGACATTGGGTCGTAGATCTCGCCGCCAGCTTGGAGAGCGAGTTCATTTCTGCGTTCGCTGTGATTTTCCGATTGCTATATATGGACGGCTGAGCCCTTGTGAGCATGCATTTTGTCTCGATTGTGCTAGAAGCGATTCACTGTGCTACCTGTGTGATGAGCGAATCCAGAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCGTATGTGCCGCTCCTCACTGTCTCAAGTCTTTCTTAAAGAGGGCTGAATTTGAGGCTCATATCCAAGACAGCCATGCAAACCTCCTTCGACCCAATGCAGATAAAGAAGACGGAAATGAGTCTGAGGCGCAAAGTGTTAGGCAATCTGCAGCTTCAGAATCCACTGCTCGAGGTCCCCAAAGGCCAGTTATTTCTCCCGGCTCAAATTCCCAGCAACATGATCAGGAAGACAAATCTCGTCGACAGCTACCAAGAGAGCAATCATCTTCGAGGCCAAACCTGCAGCAAAAGCCACCGTTTTTTGGTCAACAAAATCACCCTTCAGACTCCCTCTCTGGCCCTGGTGGAGGTATTCAACAGGGCTTCCATCAACAAGGATTTGACATGCAGCATCCTACTCAAGAACCTTCCCAGTTTGCCGACAGGCAACAAGCAGTTGGTCCAGAGATCGCATTTCCTGAGTATCCACCAATGCATTCTGGCCCCCCAACCATGGTTACTTCAAACCCAATGCTAAACCCTCCTATGCCATTCGGTTATCCTCCGTACCCACAAGATCGATCTCAACCATTCTACAGTGCTGCTCCGTACGATATGCCTAGGCAGGACTCTGCATCTGATATGGGTGGAGACCAGAATTCATTGCTGGGATTCCCGCAAGGGGTCCCAAGTGGACCAAATTTCCCTGGAAATTATCCCCAGCCCTGGCATGCAGGAATTGGTGGCGTGCCTTTCGAACAAGGGCAGGGTGGTATGGTTGTTGATCCAAGGGATGGCAAAGGCGTATTGGCACCGCAGCCTCTCCCACCACCACCTCCTCCATCCCATATCTCACATTTGAAGCAGAATTACTATTCTGGTGAACTTGGGCATGAAGGTCAGGGTTATGGTTGGCAGCATGATAGCCGTGATAGCTTTGGTGGCCAAGGCTAG 1302 0.5038 MLQIRLSKVPASEGAAGVKPSPVETVTVACPDHLVLADLPVAKGIGSATAASIVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKMMEGILVCAAPHCLKSFLKRAEFEAHIQDSHANLLRPNADKEDGNESEAQSVRQSAASESTARGPQRPVISPGSNSQQHDQEDKSRRQLPREQSSSRPNLQQKPPFFGQQNHPSDSLSGPGGGIQQGFHQQGFDMQHPTQEPSQFADRQQAVGPEIAFPEYPPMHSGPPTMVTSNPMLNPPMPFGYPPYPQDRSQPFYSAAPYDMPRQDSASDMGGDQNSLLGFPQGVPSGPNFPGNYPQPWHAGIGGVPFEQGQGGMVVDPRDGKGVLAPQPLPPPPPPSHISHLKQNYYSGELGHEGQGYGWQHDSRDSFGGQG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2872 433 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Aev06g2872 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Aev06g2872 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 407 - -
Aev06g2872 433 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Aev06g2872 433 MobiDBLite consensus disorder prediction 153 266 - -
Aev06g2872 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 407 IPR040383 GO:0016567|GO:0061630
Aev06g2872 433 MobiDBLite consensus disorder prediction 209 264 - -
Aev06g2872 433 MobiDBLite consensus disorder prediction 379 433 - -
Aev06g2872 433 MobiDBLite consensus disorder prediction 386 400 - -
Aev06g2872 433 MobiDBLite consensus disorder prediction 166 195 - -
Aev06g2872 433 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2872 1 430 C2H2 Transcription Factor Family AT5G01160 46.259 9.78e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2872 K15685 - gmx:100817582 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g2872 06 30397304 30399868 Aev06g2872 06 30397304 30399868 ECH