LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev06g2812	ATGGCAAACGTTGTTGACAAGATTGTGTATGTAAATCCTTCCAGGGAGAACTGGAGGGTGCATGTCCGTGTTGTGCGTTTGTGGAGCATTCCTAGCTATGGTAATGCATCGCTTCCTTACGCATTAGAGATGGTCCTGCTCGATTCTCATGGTGGGAAGATTCATGCTTCTGTGAGAAAGACTTTGGTTTTCAAATTTTTTAGCCTTTTAAAAGAAGGTGAAGCCTATGAAATGGTAAATTTTGGTGTGGGTCGTAATGTTGGAAATTACAAGACTACAACACATCAGTTCAAGCTAAATTTTGAGCATTCTACAACCATTAGGAGAATCAAGGAATCTAATATTTCGATTCATGGTTTTACCTTTATCGACCTTGGGGAGCTGTCAAGAAGTGATTTTGACACTTCAAATTTAGTTGATGTGATTGGAATGCTCAGTGGTGTTGGAAGTGAAAGGGATTATGAAGATAAAGATGGGAAAACTTCTAGATTCAATGTTATAAAGTTGCAGGCTAAAGGGTGTAAGGTTGATTGCGCTCTGTTTGGTTCTTATGTGAATCAACTAAATCAATTTCTGACCTCTGGAGATTTGTCTAACGCTATTGTAATTATTCAGTTTGCTAGAGTTAAAGATTTTAAAGGAAAGTTTGTCCTTCAGAATAGCATGTACGCGACTAAAGTGTTTTACAACCTAGATGTTCCTGTTGCTTTGGAGTTTAAAGATAGTTTTGAAGACTATCCAAATCTGTTGTCTGAATTGCTTGACGGAGGTAAAGACCAGTCTTTGGAGAATGAGTTTTTGAATATCATTGAGAGGAAGACTATTGAGGAGATGAAAGATTGCAACAAGGATTCTGTTTGTGTTGTACTTGCAAATATTAATGATTTTGTTGATGATGAAGAGTGGTGGTACCCATCTTGCACATGTAACAGAGCTGTTCATCCTTATTCTAATGGTTTTTTATGTCAACCTTGCAAGACGATTTTGCTTTCTGTTACTGCAAGCTTATTATTTAAGATAGAAGTCAAAATCCCTCAGAATCCAAAATTTGAGCCTTCTTATCGTGTCAAACGAATCACCGGAGATACTGCAATCATTCAAAAGTTCAAAGATTTGGCTCCTACAAAACCAGATTTTGATTCCGCAACAACATCAATTCCTGAATCAAAGTTTAAGGCTGTTGTGGAGACCAACCGTCTTTTGGAAGGAAAGAACCTACTACCTGACTTTTCCAATGATGATTCTGACAAGCATATCTTCTTTGGGGAGAGTAGCGTTAGAGATATGTTAACTCAGGGGCAAGAATTAACTCCAACTAAACGTCTTTCTGATGAAATGATGAATGTTGTTGAAGATGTTGATATTGGCAAGAAGATGATGAAAACCATCAAACAAGAGAAGGAGGATTGA	1410	0.3752	MANVVDKIVYVNPSRENWRVHVRVVRLWSIPSYGNASLPYALEMVLLDSHGGKIHASVRKTLVFKFFSLLKEGEAYEMVNFGVGRNVGNYKTTTHQFKLNFEHSTTIRRIKESNISIHGFTFIDLGELSRSDFDTSNLVDVIGMLSGVGSERDYEDKDGKTSRFNVIKLQAKGCKVDCALFGSYVNQLNQFLTSGDLSNAIVIIQFARVKDFKGKFVLQNSMYATKVFYNLDVPVALEFKDSFEDYPNLLSELLDGGKDQSLENEFLNIIERKTIEEMKDCNKDSVCVVLANINDFVDDEEWWYPSCTCNRAVHPYSNGFLCQPCKTILLSVTASLLFKIEVKIPQNPKFEPSYRVKRITGDTAIIQKFKDLAPTKPDFDSATTSIPESKFKAVVETNRLLEGKNLLPDFSNDDSDKHIFFGESSVRDMLTQGQELTPTKRLSDEMMNVVEDVDIGKKMMKTIKQEKED*	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev06g2812	469	SUPERFAMILY	Nucleic acid-binding proteins	120	244	IPR012340	-
	Aev06g2812	469	SUPERFAMILY	Nucleic acid-binding proteins	7	109	IPR012340	-
	Aev06g2812	469	CDD	RPA1_DBD_B_like	140	243	-	-
	Aev06g2812	469	Gene3D	-	4	109	IPR012340	-
	Aev06g2812	469	CDD	RPA1_DBD_A_like	19	107	-	-
	Aev06g2812	469	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	20	342	-	-
	Aev06g2812	469	PANTHER	REPLICATION FACTOR A 1, RFA1	20	342	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Aev06g2812	469	Gene3D	-	256	345	IPR012340	-
	Aev06g2812	469	Pfam	Domain of unknown function DUF223	43	110	IPR003871	-
	Aev06g2812	469	Gene3D	-	113	248	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev06g2812	Aev-Chr6	29668746	29671229	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev06g2812	8	325	Core DNA Replication Machinery Family	AT2G06510	23.460	2.39e-15	76.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev06g2812	-		-	vun:114187234	286.96