Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2799 ATGGCTGCTATAACGGTTCTGCTCTGCATTGCTTCATTGGCCATTTTTTTTGTACCAACCATTGCCCGAATCCCCGGAGTTTACATCGGTGGCCCATGGCAGAGTGCTCATGCCACTTTCTATGGTGGCAATGATGCCTCTGGAACAATGGGCGGTGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTATGGAGTGAACACAGCAGCACTGAGCACAGCACTTTTCAACGATGGATTGAGCTGTGGTTCATGCTTCGAGCTCAAGTGTGAGCAAGATCCCCAATGGTGCAACCCTGGCAACCCTTCAATCATGATCACCGCCACAAACTTTTGCCCCCCAAATTACGCTCTTCCCAGTGACAATGGTGGCTGGTGCAACCCACCTAGGCCACACTTCGATCTTGCCATGCCAATGTTCCTCAAGATCGCTCAGTACCGCGCCGGAATCGTCCCCGTCGCTTACCGCCGGGTGGCATGCAAAAAGATAGGAGGCATAAGATTCACCGTCAACGGATTCCGTTACTTCAACTTGGTTCTGATCACCAATGTCGCGGGTGCAGGAGATATCGTGCGCGTGAGCGTAAAAGGTACCAACACTGCGTGGATGAGCATGAGCCGCAATTGGGGGCAAAATTGGCAATCCAACTCAGTTTTAGTGGGTCAGGCCCTCTCTTTTAGAGTCACCGGCAGTGACAAACGAACATCAACCTCATGGAACGTGGCACCACGTAATTGGCAGTTTGGACAAACCTTCATGGGAAAGAATTTCCGCGTCTAA 780 0.5141 MAAITVLLCIASLAIFFVPTIARIPGVYIGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGLSCGSCFELKCEQDPQWCNPGNPSIMITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVACKKIGGIRFTVNGFRYFNLVLITNVAGAGDIVRVSVKGTNTAWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDKRTSTSWNVAPRNWQFGQTFMGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2799 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Aev06g2799 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Aev06g2799 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Aev06g2799 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Aev06g2799 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Aev06g2799 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Aev06g2799 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Aev06g2799 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Aev06g2799 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Aev06g2799 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Aev06g2799 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Aev06g2799 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Aev06g2799 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Aev06g2799 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Aev06g2799 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Aev06g2799 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Aev06g2799 259 PANTHER EXPANSIN 6 258 - -
Aev06g2799 259 SUPERFAMILY PHL pollen allergen 164 253 IPR036749 -
Aev06g2799 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Aev06g2799 259 Gene3D - 25 161 IPR036908 -
Aev06g2799 259 PANTHER EXPANSIN-A15 6 258 IPR002963 GO:0009664
Aev06g2799 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Aev06g2799 259 Gene3D - 165 257 IPR036749 -
Aev06g2799 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Aev06g2799 259 SMART dpbb_1 68 155 IPR007112 -
Aev06g2799 259 Pfam Lytic transglycolase 68 155 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2799 Aev-Chr6 29545473 29550858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2799 3 259 Expansin Gene Family AT2G39700 79.767 6.45e-157 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2799 - - gmx:547955 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g2799 06 29545473 29550858 Aev07g2334 07 24106554 24109776 ECH
Aev06g2799 06 29545473 29550858 Aev06g2799 06 29545473 29550858 ECH
Aev06g2799 06 29545473 29550858 Aev10g1808 10 19915455 19917429 ECH
Aev06g2799 06 29545473 29550858 Aev04g3144 04 31030151 31033436 ECH